Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq217 470 4e-128 >seq217 Length=78499 Score = 470 bits (520), Expect = 4e-128 Identities = 703/996 (71%), Gaps = 2/996 (0%) Strand=Plus/Minus Query 5200 ATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACG 5259 |||||| || ||||| |||||||| ||||||||||| || ||||| ||||| | |||||| Sbjct 41558 ATCAAGAGGAAAGTTATGAGCATTACGTTCGTGCATGACCTCCATTCCAAGATCGGCACG 41499 Query 5260 GTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGACTGATT 5319 ||| | | || ||||| ||| | || | || ||||| | ||| | ||| || Sbjct 41498 GTTGATTATGTCGGCCCAGGTGTTGATGACACGTCCCTCGGAGTCGATGACAGCCTGGTT 41439 Query 5320 GAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATAT 5379 |||||| || ||||| || || || ||||| ||||||| ||||| | ||| ||| || Sbjct 41438 GAAGTTGAATCCGTTGAGGTTGAAGGCCATGGTGGAGACACCCATGGCGGTGCACCAGAT 41379 Query 5380 GCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGC 5439 | | || ||||| ||| | |||||| || | | ||| ||||| || || Sbjct 41378 ACCCAATACAGGCCAGAGAGCTAAGAAGAAGTGAAGAGCACGCGAGTTGTTGAACGACGC 41319 Query 5440 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTC 5499 || ||||||||||| | |||||||| || ||||| || |||||||| || ||||| || Sbjct 41318 GTATTGGAAGATGAGACGTCCAAAGTACCCGTGAGCGGCGACAATGTTGTAGGTTTCCTC 41259 Query 5500 CTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAG 5559 || ||||| || || ||||| | || || | || |||||||| || | Sbjct 41258 TTCCTGGCCAAACTTGTATCCGTTATTGGTGGATTCGTTTTCGGTGGTTTCACGGATCAA 41199 Query 5560 CGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGC 5619 || |||||||||||| || ||||| || | |||||||| ||| ||||| || || || Sbjct 41198 AGAGGAAGTAACAAGAGACCCGTGCATGGCGGAGAACAAAGATCCTCCGAAGACACCTGC 41139 Query 5620 AACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACAT 5679 ||| ||| ||| || | ||| ||||||||||| ||||| || |||||||| || ||||| Sbjct 41138 AACTCCGGCCATATGAAGCGGGTGCATAAGGATGTTGTGCTCGGCCTGGAAGACCAACAT 41079 Query 5680 AAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAA 5739 ||||| || || || ||||||||||||||| ||||| ||||||||| || || | Sbjct 41078 GAAGTTGAAGGTTCCGCTGATACCAAGAGGCATGCCATCTGAGAAACTTCCTTGCCCAAT 41019 Query 5740 AGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAAT 5799 ||||| | || || | | ||| || ||||| ||||| || |||| || |||| Sbjct 41018 GGGGTAGGTGAGGAAGACAGCGGTGGCGGCTGCAACAGGTGCGGAGAATGCAACAAAAAT 40959 Query 5800 CCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGAT 5859 ||| || |||||||| | | || ||||||||| | || |||| ||| | || | Sbjct 40958 CCAAGGACGCATTCCGAGGCGATACGAAAGTTCCCACTCACGGCCCATGTACGAAGCAAC 40899 Query 5860 ACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATC 5919 || | ||||||||| | || || | |||||| |||||||| ||||| | |||||| || Sbjct 40898 TCCGAGAAGGAAGTGCATCACAACCAATTGGTAGGGTCCTCCGTTGTACAACCATTCGTC 40839 Query 5920 GAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTAC 5979 | ||| |||||||| | ||| |||||||| | ||| ||||||||| | || | Sbjct 40838 CATGGAGGCAGCTTCCCAAACGGGGTAGAAGTGCATCCCGATTGCGTTGKAAGAAGGGAT 40779 Query 5980 AACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTAT 6039 || | || | |||||||| || || || || |||||||| || || ||||| || || Sbjct 40778 GACAGACCCGGTGATGATGTTATTACCGTAAAGAAGAGATCCGGCAACAGGTTCGCGGAT 40719 Query 6040 GCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCA-GTAGTTGCGG 6098 ||||| ||||| || || ||||| || | ||||| | || | ||| | | ||||| Sbjct 40718 TCCGTCAATGTCCACAGGAGGTGCGGCAATAAATGC-AGTAATGAAGCATGATGCTGCGG 40660 Query 6099 TTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGC 6158 | || | || | ||| | ||| ||||| || | || |||||||||| ||||| Sbjct 40659 CAAGAAGAGTTGGGAACATGATAGTACCGAACCAACCGATGTAAAGGCGGTTGTCGGTGC 40600 Query 6159 TAGTAACCCAGTCACAGAACTTATCCCAATTGGAAA 6194 | || | ||||| |||| || ||||| ||| || Sbjct 40599 TTGTGATCCAGTTGGAGAATTTTTCCCACGTGGCAA 40564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152647607827314