Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq217 547 2e-151 >seq217 Length=78499 Score = 547 bits (606), Expect = 2e-151 Identities = 724/1002 (72%), Gaps = 10/1002 (1%) Strand=Plus/Minus Query 25448 CAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 25507 |||| || || |||||||| ||||| || || ||||| || ||||| || ||||| || | Sbjct 41568 CAGAAGCCAAATCAAGAGGAAAGTTATGAGCATTACGTTCGTGCATGACCTCCATTCCAA 41509 Query 25508 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 25567 ||||||||||| | ||||| ||||| || || ||| | ||| | ||| || | || Sbjct 41508 GATCGGCACGGTTGATTATGTCGGCCCAGGTGTTGATGACACGTCCCTCGGAGTCGATGA 41449 Query 25568 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 25627 | | ||| |||||||| || |||||||| || || ||||| |||||||| ||||| |||| Sbjct 41448 CAGCCTGGTTGAAGTTGAATCCGTTGAGGTTGAAGGCCATGGTGGAGACACCCATGGCGG 41389 Query 25628 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTAT 25687 | ||| || | || ||||| ||| | |||||| || | | ||| || | Sbjct 41388 TGCACCAGATACCCAATACAGGCCAGAGAGCTAAGAAGAAGTGAAGAGCACGCGAGTTGT 41329 Query 25688 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 25747 | || || || ||||||||||| | |||||||| || ||||| || |||||||| | Sbjct 41328 TGAACGACGCGTATTGGAAGATGAGACGTCCAAAGTACCCGTGAGCGGCGACAATGTTGT 41269 Query 25748 ACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTT 25807 | || || ||||| ||||| || || ||||| | || ||||| | || |||| Sbjct 41268 AGGTTTCCTCTTCCTGGCCAAACTTGTATCCGTTATTGGTGGATTCGTTTTCGGTGGTTT 41209 Query 25808 CACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 25867 |||| || | ||||||||||||||| |||||||| || | ||| |||| ||| |||| Sbjct 41208 CACGGATCAAAGAGGAAGTAACAAGAGACCCGTGCATGGCGGAGAACAAAGATCCTCCGA 41149 Query 25868 ATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAA 25927 | || |||||||| ||| |||||| | ||| ||||||||||| ||||| || ||||| | Sbjct 41148 AGACACCTGCAACTCCGGCCATATGAAGCGGGTGCATAAGGATGTTGTGCTCGGCCTGGA 41089 Query 25928 AGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCC 25987 |||| ||||| || ||||| || || |||||||||||||| ||||| |||||||| | Sbjct 41088 AGACCAACATGAAGTTGAAGGTTCCGCTGATACCAAGAGGCATGCCATCTGAGAAACTTC 41029 Query 25988 CTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAG 26047 |||| |||| |||||| | ||| ||||| || ||||||||||| || || | | Sbjct 41028 CTTGCCCAATGGGGTAGGTGAGGAAGACAGCGGTGGCGGCTGCAACAGGTGCGGAGAATG 40969 Query 26048 CTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGT 26107 | ||| | ||||| || | ||| || || | ||| ||||||||| | || |||| || Sbjct 40968 CAACAAAAATCCAAGGACGCATTCCGAGGCGATACGAAAGTTCCCACTCACGGCCCATGT 40909 Query 26108 AAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACA 26167 | | | | |||| || ||||| | ||||| | ||| || ||||| ||||| |||| Sbjct 40908 ACGAAGCAACTCCGAGAAGGAAGTGCATCACAACCAATTGGTAGGGTCCTCCGTTGTACA 40849 Query 26168 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAG 26227 |||| ||||| | || ||||||||||| | ||||||||||| | ||||||||||| Sbjct 40848 ACCATTCGTCCATGGAGGCAGCTTCCCAAACGGGGTAGAAGTGCATCCCGATTGCGTTGK 40789 Query 26228 ATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAG 26287 | || |||| || | ||| | ||||||||| || || || || | | ||| | |||| Sbjct 40788 AAGAAGGGATGACAGACCCGGTGATGATGTTATTACCGTAAAGAAGAGATCCGGCAACAG 40729 Query 26288 GCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGC---AATTAAAAATG 26344 | || || || || || || ||||| ||||| || |||| |||||| ||| || ||| Sbjct 40728 GTTCGCGGATTCCGTCAATGTCCACAGGAGGTGCGGCAATAAATGCAGTAATGAAGCATG 40669 Query 26345 CTGTCACTGCTGTTAAAAGTGCAGGGATCAT--TAGTACCCCAAACCACCCCACATAGAG 26402 || |||| | | ||| | |||| ||| ||||| || ||||| || | || || Sbjct 40668 ATG---CTGCGGCAAGAAGAGTTGGGAACATGATAGTA--CCGAACCAACCGATGTAAAG 40614 Query 26403 GCGGTTGTTTGTACTTGTAACCCAGTCACATAAACTTTCCCA 26444 |||||||| || ||||| | ||||| | || ||||||| Sbjct 40613 GCGGTTGTCGGTGCTTGTGATCCAGTTGGAGAATTTTTCCCA 40572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151991616388524