Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq386 138 9e-28 seq456 125 6e-24 seq141 120 2e-22 seq3 111 1e-19 seq22 100 2e-16 >seq386 Length=39556 Score = 138 bits (152), Expect = 9e-28 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | | ||| | ||||| ||||| |||||||| ||||| |||||||| ||| Sbjct 11434 TTCCTCCACGAAGACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGC 11375 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || || |||| ||||||||||| || ||||| ||||| | ||| ||||| || | Sbjct 11374 TTAGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAG 11315 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || || || || || || ||| | || | ||||| || | || | Sbjct 11314 GAATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCGA 11255 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTG 101466 | || | |||| || |||||||| ||||||||||| || ||||| Sbjct 11254 CATCCAACGTGATTGTCTTGCCGGTCAAAGTTTTTACGAAAATCTG 11209 Score = 107 bits (118), Expect = 2e-18 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||||| ||| | || || ||||| || ||||| ||||| || ||||| || Sbjct 11890 TTCCTCCTCTTAGACGGAGGACCAAGTGAAGCGTGGATTCCTTTTGGATGTTGTAGTCAC 11831 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | | | || |||| |||||| || ||||| ||||| | ||| ||||| || | Sbjct 11830 TCAAGGTGCGGCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTG 11771 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || || || || || || || | || | || ||||||| ||| | Sbjct 11770 GGATTCCTTCCTTGTCCTGGATCTTGGTCTTCACGTTATCAATGGTATCAGACGGTTCAA 11711 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAA 101480 | || || |||| || || || || | || || ||||| || ||||| | | |||| Sbjct 11710 CGTCCAGTGTGATGGTCTTACCAGTGAGTGTCTTCACAAAGATTTGCATTCCTCCACGAA 11651 Query 101481 GA 101482 || Sbjct 11650 GA 11649 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| || |||||||||||||| ||||| || ||||| || Sbjct 12116 CCTCCGCGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTC 12057 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | | || |||| |||||| || ||||| || | |||||| ||||| || ||| Sbjct 12056 AAGGTGCGGCCGTCTTCCAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGATCAGGAGGA 11997 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || || || || || || | || | || ||||| | |||||| Sbjct 11996 ATTCCTTCCTTGTCCTGGATCTTGGTCTTCACGTTGTCAATGGTATCAGATGGTTCCACA 11937 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | || || || || | || || ||||| || ||||| Sbjct 11936 TCCAGTGTAATAGTCTTACCAGTGAGCGTCTTCACAAAGATTTGCAT 11890 Score = 95.1 bits (104), Expect = 1e-14 Identities = 166/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | | ||| | || | || || || || || || || |||||||| ||| Sbjct 11662 TTCCTCCACGAAGACGAAGGACCAGGTGCAGAGTGGACTCCTTCTGAATATTGTAGTCGC 11603 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || || |||| ||||||||||| || ||||| ||||| | ||| ||||| || | Sbjct 11602 TTAGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTG 11543 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || || ||||| || || ||| | || | |||||| || | || | Sbjct 11542 GGATTCCTTCCTTGTCCTGAATCTTGGTCTTGACATTGTCAATAGTGTCCGAAGGCTCGA 11483 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAA 101480 | || | |||| || || || || | || || ||||| || ||||| | | |||| Sbjct 11482 CATCCAACGTGATAGTCTTTCCCGTGAGGGTCTTGACAAAGATTTGCATTCCTCCACGAA 11423 Query 101481 GA 101482 || Sbjct 11422 GA 11421 >seq456 Length=31050 Score = 125 bits (138), Expect = 6e-24 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | || || | || || |||||||| ||||| || || || ||||| ||| Sbjct 6859 CCTCCCCGCAAGCGAAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTC 6800 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| ||||||||||| || ||||| || | |||||| || ||||| ||| Sbjct 6799 AGGGTGCGGCCATCCTCCAATTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGA 6740 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || || || || ||| || | || | ||||| |||| |||||| Sbjct 6739 ATTCCTTCCTTGTCCTGGATCTTGGTTTTGACGTTGTCGATGGTGTCGGACGGTTCCACG 6680 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTG 101466 || || |||| || ||||| || | || |||||||| ||||| Sbjct 6679 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTACAAAAATCTG 6636 >seq141 Length=126064 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 ||||||||| || || | || ||||| ||||| ||||| ||||| || |||||||| Sbjct 117155 TCCTCCTCTCAATCGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACT 117096 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | ||||| |||| ||||||||||| || ||||| || | ||| || ||||| || || Sbjct 117095 CAGAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTGG 117036 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 || ||||| || || || || || || || | || | ||||| || | || || Sbjct 117035 GATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGATGGCTCGAC 116976 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || ||||||| || || ||||| | || || || || || |||||||| Sbjct 116975 ATCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATGGT 116925 >seq3 Length=497493 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 |||||||| | ||| | ||| || |||||||| ||||| ||||| || ||||||||| Sbjct 135392 TCCTCCTCGGAGACGAAGAACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCGCT 135333 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | || | |||| ||||||||||| || ||||| || | ||| |||||||| || || Sbjct 135332 CAAGGTGCGTCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCAGGAGG 135273 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 || ||||| || || || || || || || | || | |||||| || | || || Sbjct 135272 GATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCAATAGTGTCCGATGGCTCGAC 135213 Query 101422 TTCAAGAGTGA 101432 |||||||||| Sbjct 135212 ATCAAGAGTGA 135202 >seq22 Length=300247 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || |||||||| || ||||| || || || || || ||| Sbjct 203635 CCTCCACGAAGACGAAGCACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAGTCGCTC 203576 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| ||||||||||| || |||||||| | |||||| |||||||| ||| Sbjct 203575 AAAGTACGACCATCCTCCAATTGCTTTCCAGCAAATATAAGACGCTGCTGATCGGGAGGA 203516 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| || || || ||| | || | || ||||| | || || Sbjct 203515 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTATCAATCGTATCAGATGGCTCTACA 203456 Query 101423 TCAAGAGTGA 101432 || | ||||| Sbjct 203455 TCCAAAGTGA 203446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396273092222343