Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq532 95.1 2e-14 seq480 95.1 2e-14 >seq532 Length=21354 Score = 95.1 bits (104), Expect = 2e-14 Identities = 189/277 (68%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 197022 CAGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTC 197081 ||||||||||||| ||||||||| |||||||| || | | | | || || |||| Sbjct 3341 CAGATCCTCGTCGGAAAAGCCCGTCCCGATCTTGCAGACGCTCTGGAACTCCTCCGTGTC 3400 Query 197082 GGGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTT 197141 ||||| ||| ||||| || | | | || ||||| || || | ||| || |||| Sbjct 3401 GGGATCGTAGCAGGCCAGCAGGTAGGCCCCGTAKACCCCGGTGCGCTTCCCGCGGCCGTA 3460 Query 197142 GAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTT 197201 | || | || | ||||| || | |||| | |||||| |||| ||| || ||||| Sbjct 3461 GTAGGCCCCCAGGGGGACCAGGTCGAAGCTGTCCCCCACCCCGTCCAGGTAGTCCTTCTT 3520 Query 197202 CAGTTTGAGCCAGCTTCTAGAT-CTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGG 197260 || ||||||||| ||| | | ||| || ||||||| | || | ||| || Sbjct 3521 GAGCTTGAGCCAG-TTCAGGCTCCTCCGGGAGGGCTCGTAGAT---GT---CCACCATGG 3573 Query 197261 TCTTGATCATCAATCCCTCGCAATCTTCCTTCACGGC 197297 |||||| ||| | ||||||||| | |||| ||||| Sbjct 3574 TCTTGACCATGAGTCCCTCGCACTGGCCCTTGACGGC 3610 >seq480 Length=25944 Score = 95.1 bits (104), Expect = 2e-14 Identities = 189/277 (68%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 197022 CAGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTC 197081 ||||||||||||| ||||||||| |||||||| || | | | | || || |||| Sbjct 19892 CAGATCCTCGTCGGAAAAGCCCGTCCCGATCTTGCAGACGCTCTGGAACTCCTCCGTGTC 19951 Query 197082 GGGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTT 197141 ||||| ||| ||||| || | | | || ||||| || || | ||| || |||| Sbjct 19952 GGGATCGTAGCAGGCCAGCAGGTAGGCCCCGTAKACCCCGGTGCGCTTCCCGCGGCCGTA 20011 Query 197142 GAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTT 197201 | || | || | ||||| || | |||| | |||||| |||| ||| || ||||| Sbjct 20012 GTAGGCCCCCAGGGGGACCAGGTCGAAGCTGTCCCCCACCCCGTCCAGGTAGTCCTTCTT 20071 Query 197202 CAGTTTGAGCCAGCTTCTAGAT-CTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGG 197260 || ||||||||| ||| | | ||| || ||||||| | || | ||| || Sbjct 20072 GAGCTTGAGCCAG-TTCAGGCTCCTCCGGGAGGGCTCGTAGAT---GT---CCACCATGG 20124 Query 197261 TCTTGATCATCAATCCCTCGCAATCTTCCTTCACGGC 197297 |||||| ||| | ||||||||| | |||| ||||| Sbjct 20125 TCTTGACCATGAGTCCCTCGCACTGGCCCTTGACGGC 20161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676720303427120