Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq217 583 1e-161 >seq217 Length=78499 Score = 583 bits (646), Expect = 1e-161 Identities = 711/970 (73%), Gaps = 0/970 (0%) Strand=Plus/Plus Query 162523 GACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCA 162582 ||||| ||| | || |||||||||||||| | ||| |||| | || || ||| Sbjct 40605 GACAACCGCCTTTACATCGGTTGGTTCGGTACTATCATGTTCCCAACTCTTCTTGCCGCA 40664 Query 162583 GCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGA 162642 ||| | |||||||| | |||||| ||||| |||||||| || || || || || ||| | Sbjct 40665 GCATCATGCTTCATTACTGCATTTATTGCCGCACCTCCTGTGGACATTGACGGAATCCGC 40724 Query 162643 GAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCT 162702 ||||||||||| || || ||||| || ||||| ||||||||| | || ||||| | ||| Sbjct 40725 GAACCTGTTGCCGGATCTCTTCTTTACGGTAATAACATCATCACCGGGTCTGTCATCCCT 40784 Query 162703 AGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAG 162762 || || || || || | |||||||| || | |||||||| || | | || || Sbjct 40785 TCTTMCAACGCAATCGGGATGCACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAA 40844 Query 162763 TGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACA 162822 |||||||| || || ||||| | |||| | || || | ||||||||| ||||| | | Sbjct 40845 TGGTTGTACAACGGAGGACCCTACCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCT 40904 Query 162823 GCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGT 162882 | ||| || ||| ||||||||||||| || ||| | || |||||||||||||| | | Sbjct 40905 TCGTACATGGGCCGTGAGTGGGAACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTT 40964 Query 162883 GTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGT 162942 ||||||| ||| ||||| || | || || |||||| ||| | ||| || | || Sbjct 40965 GTTGCATTCTCCGCACCTGTTGCAGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGG 41024 Query 162943 CAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTC 163002 ||||| |||||| || | |||||||||||||| || || || |||| |||||| Sbjct 41025 CAAGGAAGTTTCTCAGATGGCATGCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTG 41084 Query 163003 GTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGT 163062 || ||||| || |||||||||||||| |||||||| | |||||| ||||| |||||| Sbjct 41085 GTCTTCCAGGCCGAGCACAACATCCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGT 41144 Query 163063 GTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATC 163122 || ||||| || || | || || |||||||| |||||||||||||| ||| | ||| Sbjct 41145 GTCTTCGGAGGATCTTTGTTCTCCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATC 41204 Query 163123 AGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAG 163182 | ||||| || || | || || || |||| || ||||| || || ||||| || Sbjct 41205 CGTGAAACCACCGAAAACGAATCCACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAA 41264 Query 163183 ACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCT 163242 || ||||||||||| || ||||| || |||||||| || | |||||||| || || || Sbjct 41265 ACCTACAACATTGTCGCCGCTCACGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCG 41324 Query 163243 TTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGG 163302 ||||||||||| ||| | |||||||||||| | ||| | ||||| | | |||||| Sbjct 41325 TTCAACAACTCGCGTGCTCTTCACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGG 41384 Query 163303 TTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAA 163362 | ||| || |||||||| || || ||||| |||||||| ||||| |||||||||||||| Sbjct 41385 TGCACCGCCATGGGTGTCTCCACCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAG 41444 Query 163363 TCCGTCGTTGACGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCA 163422 | ||| | ||| | | || || || || ||||| || || | ||| | || Sbjct 41445 GCTGTCATCGACTCCGAGGGACGTGTCATCAACACCTGGGCCGACATAATCAACCGTGCC 41504 Query 163423 GGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCT 163482 | ||||| ||||| || |||||||| ||||||||||| ||||| || ||||| | ||| Sbjct 41505 GATCTTGGAATGGAGGTCATGCACGAACGTAATGCTCATAACTTTCCTCTTGATTTGGCT 41564 Query 163483 GCTGCTGAGA 163492 ||| |||| Sbjct 41565 TCTGGCGAGA 41574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553077201997560