Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq110 149 1e-30 seq108 125 1e-23 >seq110 Length=137954 Score = 149 bits (164), Expect = 1e-30 Identities = 569/877 (65%), Gaps = 46/877 (5%) Strand=Plus/Minus Query 47824 CGCCGCTGTCTTGACCTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTC 47883 ||||||| |||| | ||| ||||| || | ||||| || ||||| ||||| |||| Sbjct 11771 CGCCGCT--CTTGGC---GTATTCCCCGACGCGCTTCTCGAAAAAGTTGGTCTTTCCCTG 11717 Query 47884 CAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCC 47943 || |||||| ||||||| | ||||||||||| || | || | || || Sbjct 11716 CAGCGAGATCATCTCCATCCACTCAAAGGGGTTGGGGGTCTGGTAGTGCTTTGGGGCACC 11657 Query 47944 CATCTGTTCCAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTT 48003 || |||||||| | || ||| | |||||||||| | |||||| | ||| Sbjct 11656 CAGGGCGACCAGCAGGCGGTCGGCGCAGAACTCGATGTACTGCTGCATGAGCTTCGAGTT 11597 Query 48004 CATGCCTATGAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGC 48063 |||||| ||||| || || | || | ||| || ||||| || || | ||||| Sbjct 11596 CATGCCGATGAGCTCTACCGGGAGGGCGTCGCTGACGAATTCCTTTTCGATGTCGACGGC 11537 Query 48064 TTCCCCCACAATCTGCTTAACGCGGGACTCTGAGG---GTTTGTTGCGCAGGTGCTTGGC 48120 | ||||||| | | ||| ||| | || | |||||| ||| | ||| Sbjct 11536 GTTGGTGACAATCTCCACGATGCG---CTCGGGGGCGAGCTTGTTGACCAGCTTGTTG-- 11482 Query 48121 ATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGA 48180 |||||||||||||||||||| | ||| | || ||||| || ||||||| ||||||| Sbjct 11481 -TAGAGCATGCAGGCAAAGTCGCAGTGGAGTCCCTCGTCGCGCGAGATGAGCTCGTTGGA 11423 Query 48181 GAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCC 48240 ||| || || ||||||| || | || |||||||| || || || ||| || Sbjct 11422 AAAGGCCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAGCTCCC 11363 Query 48241 AGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGA-GCCTCTCTCCG-AAAGAAG-- 48296 ||||| ||||| |||||||| | ||| || || || || | ||||| |||| | Sbjct 11362 CGAGAAAAAGATTCCCTCCAC-GACGCAAA--AGGCGACGCACCGCTCCGCAAAGCTGGC 11306 Query 48297 CGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCG 48356 | ||| | | | ||| || |||||| ||||| ||| | ||| || | || Sbjct 11305 CATTCCCGAGT-CGCACCACTGGAGGGCCCAGCGGGCCTTTTTCCGCACGCAGGGGACCG 11247 Query 48357 TCTCTATGGCCCGGAAGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AG 48410 | || ||||| ||| || | ||| ||| | | ||| | || || Sbjct 11246 TGTCGATGGCGTGGAGGAGACGGAGCTT---CTCCTCGGAATCCTTGATGTACGTGTCGA 11190 Query 48411 TGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGA 48470 |||| ||| | ||| |||| ||||| | ||||| | ||||||||||| ||||||| Sbjct 11189 TGAGGAGC---GAGTAGGTCTCCGAGTGGATGTTCTCCACCGCGATCTGGAAGCCGTAGA 11133 Query 48471 AGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGA 48530 || | |||| | ||| | || || || ||| ||| || || |||| Sbjct 11132 AGCAGCGTCCCTCGGGCGACTGGAGCTCGGTCATAAAGTTCTGTGCCAGGTTTTCGTTGA 11073 Query 48531 CTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGT 48590 | ||||| || || || ||||||||||| |||| || | | ||| || |||||||||| Sbjct 11072 CGATCCCGTCCGATGCCGCAAAGAAGGCCAGGATGTGGCTGATGAAGTGTCGCTCGTTGT 11013 Query 48591 GGGTGAGAGCAT--TCCA----GCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAG 48644 | || ||| | ||| ||| ||| || ||| || || | |||||| | | Sbjct 11012 CG--GACAGCTTGACCCAATCGGCCATGTCCG----AGCCGAGATCGATCTCTTCCGCGG 10959 Query 48645 TCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCA 48681 |||||||||| || || ||||||||||| |||| Sbjct 10958 TCCAGAAGGAGGCCTCGGCCTTTTTGTACATTTCCCA 10922 >seq108 Length=147947 Score = 125 bits (138), Expect = 1e-23 Identities = 424/648 (65%), Gaps = 20/648 (3%) Strand=Plus/Minus Query 213488 GATGCTGGCCAGGTTGCAAACGGCCACCTCCT---GAGAGTCTGTGTACTCCATGATCTC 213544 ||||||||| |||||||||||||| |||| |||| ||||||| | ||||| Sbjct 13288 GATGCTGGCAAGGTTGCAAACGGCAGTTTCCTCTGGAGAA---GTGTACTGAACAATCTC 13232 Query 213545 GGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGC 213604 ||| || ||||| || || ||||| |||| ||| || || || ||||| |||| | Sbjct 13231 GGTACATAGGTTCGAACAACGAATGGTTCCCAAGTTTTGTTGATTCGACTTGTTGTTG-C 13173 Query 213605 AGA-ATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC 213663 || ||||||||| | |||||| |||| || || || | ||| || ||| || | Sbjct 13172 AGTGATCCTTGTACACCATGTAAGGGGTTCCTGTTTCGACCTGCGAGTCCAAGATTGCGA 13113 Query 213664 TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTT 213723 |||||| | | |||| | | | ||| | | | | |||||||| || Sbjct 13112 ACCAGAGCTGCTGCGCCTGAATTGTTTGGC-GACCCTTGCCTTCTTT--CTCGTACTTTT 13056 Query 213724 CGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGAC 213783 |||| | || ||||| || || || | | || || || || |||||| Sbjct 13055 CGTACAATTCCTTGAACTCYTGTCCGTGGCAATCGGGGAGACCGGGGCACTCGTCGGGAC 12996 Query 213784 ACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACA 213843 |||| | |||| ||||| | |||| | | |||||||||||| |||| ||| | Sbjct 12995 ACATCAACGTCCATGTCCCGTTGGCCTTGACACGTTCCATGAACAGGTCAGGGATCCAGA 12936 Query 213844 GCGCGGTGAACAGGTCCCTGGTCCTC-CTCTCGTCCACTCCAG-AGTTTTTGCGCAGATC 213901 | | | |||| || | || | | || | | ||| | ||||||||| ||||| Sbjct 12935 GAGAGTAAAACAAATCAC--GTGCGCGATCGGCTTCGTTCCCGTGGTTTTTGCGAAGATC 12878 Query 213902 TAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCT 213961 || |||| ||||||| || |||||||| ||||||| ||| ||||||| | ||| | Sbjct 12877 TAAAAAGGCAAAGATATCTGCGTGCCAGGGCTCCAAGTAAATGGCAATGCTTCCCTTGCG 12818 Query 213962 CTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTAC 214018 |||| || ||||| || || | ||| ||||||||| |||| | ||| || Sbjct 12817 CTTGCCTCCACCCTGATCGACGTATCKGGCGGTGTTGTTGAAGACACGCAACATGGGGAC 12758 Query 214019 CAGCCCGTTGGACTGT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGC 214077 | || ||||| ||| ||||||||||| || || || ||| | | |||| Sbjct 12757 GATGCCATTGGA-TGTACCGTTGGTTCCACGAATGTAGGATTTACTGGCACGAATGTTGT 12699 Query 214078 TCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGC 214125 | | || || || ||||| |||||||| || |||| |||||||| Sbjct 12698 GGGTTGCCAGACCAATTCCACCTGCGTACTTCGAAATCACGGCGCAGC 12651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931520003068160