Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq108 172 1e-37 seq110 156 8e-33 >seq108 Length=147947 Score = 172 bits (190), Expect = 1e-37 Identities = 338/493 (69%), Gaps = 10/493 (2%) Strand=Plus/Minus Query 221981 AGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGC 222040 || || || ||| | |||||||||||| |||| | |||| | ||||| | | | Sbjct 13017 AGACCGGGGCACTCGTCGGGACACATCAACGTCCATGTCCCGTTGGCCTTGACACGTTCC 12958 Query 222041 ATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACG 222100 ||||| ||||| |||||||| || | | ||| | ||| | || ||| | || | || Sbjct 12957 ATGAACAGGTCAGGGATCCAGAGAGAGTAAAACAAATCAC--GTGCGC-GATCGGCTTCG 12901 Query 222101 ---CCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGA 222157 |||| |||||| | ||||| ||||| |||| || || |||||||| ||||||| Sbjct 12900 TTCCCGTGGTTTTTGCGAAGATCTAAAAAGGCAAAGATATCTGCGTGCCAGGGCTCCAAG 12841 Query 222158 TAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACC-ATCCTCTCCAGAGC 222216 || | ||| | || |||||| ||||||||||| || ||| | | | Sbjct 12840 TAAATGGCAATGCTTCCCTTGCGCTTGCCTCCACCCTGATCGACGTATCKGG--CGGTGT 12783 Query 222217 -GTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGT 222275 |||||||| || | | || || | || |||||| ||||||||| || ||||| Sbjct 12782 TGTTGAAGACACGCAACATGGGGACGATGCCATTGGATGTACCGTTGGTTCCACGAATGT 12723 Query 222276 ACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGA 222335 | | | ||| | | ||| || | || || || ||||| |||| ||||| | Sbjct 12722 AGGATTTACTGGCACGAATGTTGTGGGTTGCCAGACCAATTCCACCTGCGTACTTCGAAA 12663 Query 222336 TCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCA 222395 ||| ||||||||||||||| ||||| |||||| || || ||||| ||||| | ||| Sbjct 12662 TCACGGCGCAGCTCTTGAGTGTGTCGTAGATGCCATCGATGGAGTCTTCCTTCATTGTCA 12603 Query 222396 GCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGG 222455 |||||||||||| |||||||||| ||| ||| | |||||| || || || || ||| Sbjct 12602 ACAGAAAACAAGAGGACATCTGAGGGTTGTTGGTTCCGGCGTTGAAGAGGGTCGGTGTGG 12543 Query 222456 CGTGTGTAAAGTA 222468 | || || ||||| Sbjct 12542 CATGGGTGAAGTA 12530 >seq110 Length=137954 Score = 156 bits (172), Expect = 8e-33 Identities = 381/568 (67%), Gaps = 12/568 (2%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||||| |||||||| ||||| | ||| ||||||||| |||||||| ||||| | | Sbjct 10922 TGGGAAATGTACAAAAAGGCCGAGGCCTCCTTCTGGACCGCGGAAGAGATCGATCTCGGC 10981 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 |||||||| || ||| | || ||| | |||||| || || ||| || | Sbjct 10982 TCGGACATGGCCGATTGGGTCAAGCTGTCCGACAACGAGCGACACTTCATCAGCCACATC 11041 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 |||| |||||||| || || || || || || ||||| || ||| ||| || | Sbjct 11042 CTGGCCTTCTTTGCGGCATCGGACGGGATCGTCAACGAAAACCTGGCACAGAACTTTATG 11101 Query 25660 AGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAAT 25719 | || | |||| |||| || |||||||| |||||||| || | || || Sbjct 11102 ACCGAGCTCCAGTCGCCCGAGGGACGCTGCTTCTACGGCTTCCAGATCGCGGTGGAGAAC 11161 Query 25720 GTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGAG 25776 | ||||| ||| || | ||| || || |||||||| | || || ||| Sbjct 11162 ATCCACTCGGAGACCTACTC---GCTCCTCATCGACACGTACATCAAGGATTCCGAGGAG 11218 Query 25777 AGAGATCGG-CTGTTTGGTGCCATCGAGCACA-TACCCAGCATCAAGAGGAAGGCGCGGT 25834 | || || | || | |||||||| ||| | ||| || | || ||||| || | Sbjct 11219 A-AGCTCCGTCTCCTCCACGCCATCGA-CACGGTCCCCTGCGTGCGGAAAAAGGCCCGCT 11276 Query 25835 GGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 ||||| | ||||| | || | || | |||| |||||| || |||||| Sbjct 11277 GGGCCCTCCAGTGGTGCGACTCGGGAATGGCCAGCTTTGCGGAGCGGTGCGTCGCCTTTT 11336 Query 25895 CTGCTGTGGAGGGCATCTTTTTCA-GCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 | |||||||| ||||||||| | || | | |||| ||||||| ||||||||| || Sbjct 11337 GCGTCGTGGAGGGAATCTTTTTCTCGGGGAGCTTCTGCG-CCATCTTTTGGCTCAAGAAG 11395 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || ||||||||| ||| ||||||||||||||||||| | |||||||| ||| Sbjct 11396 CGCGGCCTCATGCCCGGCCTGGCCTTTTCCAACGAGCTCATCTCGCGCGACGAGGGACTC 11455 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||| | || ||||||||| ||||||||| Sbjct 11456 CACTGCGACTTTGCCTGCATGCTCTACA 11483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928832039994560