Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq217 719 0.0 >seq217 Length=78499 Score = 719 bits (796), Expect = 0.0 Identities = 755/991 (76%), Gaps = 2/991 (0%) Strand=Plus/Plus Query 8235 CACTTGGGAAAATTTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTG 8294 ||| |||||||| || | | | ||| |||| ||| | || ||| | || |||| || Sbjct 40568 CACGTGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTG 40627 Query 8295 GTTTGGCGTTCTCATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATT 8354 ||| || | ||||| ||||||| ||||||||||| || ||||||||||| ||||| Sbjct 40628 GTTCGGTACTATCATGTTCCCAACTCTTCTTGCCGCAGCATCATGCTTCATTACTGCATT 40687 Query 8355 CGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCAT 8414 |||| || |||||||||||||| ||||| ||||||||||| ||||| |||||||| | Sbjct 40688 TATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCT 40747 Query 8415 GTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCA 8474 |||||||| ||||||||| | || | || | || | |||||||| || | || Sbjct 40748 TTACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCA 40807 Query 8475 CTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTA 8534 |||||||||| | |||||||| || || | || || ||| | |||||||| || || || Sbjct 40808 CTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTA 40867 Query 8535 CCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGA 8594 ||| | || || | |||||||| || || || | | || ||||| ||||| ||||| Sbjct 40868 CCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGGA 40927 Query 8595 ACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGC 8654 |||||| || ||||| || |||||||||||||| | |||||||| ||| || |||||||| Sbjct 40928 ACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGC 40987 Query 8655 CGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTAT 8714 || || | ||||| ||||| ||| || |||| ||||| ||||| ||||| || Sbjct 40988 AGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCAT 41047 Query 8715 GCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACAT 8774 ||||||||||||| ||| || ||||||| ||| | ||||||||||| ||||||||||| Sbjct 41048 GCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACAT 41107 Query 8775 CCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTC 8834 ||| |||||||| | || ||| || ||||| ||||||||||| |||||| | || || Sbjct 41108 CCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTC 41167 Query 8835 CGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTC 8894 ||| ||||| || || || |||||||| || || | ||||| |||||||||| ||| || Sbjct 41168 CGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAATC 41227 Query 8895 TCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCA 8954 || | || |||||||| || || ||||||||||| ||||||||||| |||||||| Sbjct 41228 CACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCA 41287 Query 8955 TGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCT-TGC 9013 || |||||||| || | ||||||||||| || || || ||||| || | ||| | | Sbjct 41288 CGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCG-TGCTCTTC 41346 Query 9014 ATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGA 9073 | |||||| | ||| |||||||| |||| ||||||| |||||| | || ||||| | Sbjct 41347 ACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCA 41406 Query 9074 CCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGAC 9133 ||||||| ||||||||||| || ||||||||||||||| | | |||||| | |||| Sbjct 41407 CCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGAC 41466 Query 9134 GAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGC 9193 | || ||||||||||||| ||| || | ||||| || | || || ||||| ||||||| Sbjct 41467 GTGTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGC 41526 Query 9194 ACGAAAGAAACGCACACAACTTCCCGCTTGA 9224 ||||| | || || || ||||| || ||||| Sbjct 41527 ACGAACGTAATGCTCATAACTTTCCTCTTGA 41557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516472904856000