Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq21 170 1e-36 seq386 127 1e-23 seq22 111 1e-18 seq3 102 5e-16 seq141 96.9 2e-14 >seq21 Length=285816 Score = 170 bits (188), Expect = 1e-36 Identities = 402/593 (68%), Gaps = 18/593 (3%) Strand=Plus/Minus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 || |||||| | ||||| || ||| ||||| | |||||||||||||| || ||| Sbjct 159401 GGAATTGATCTTGGAACCACCTACTCGTGTGTCGGTGTTTGGCAAAATGACCGTGTCGAA 159342 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || |||||||| ||||||||||| | || || || || |||||| | || ||||| || Sbjct 159341 ATCATTGCCAACGACCAAGGTAACCGTACTACCCCTTCTTATGTTGCCTTCACTGAGACC 159282 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 || | |||||||||||||||||| || | ||| || || ||| | | ||| || | Sbjct 159281 GAGCGTCTTATTGGAGATGCTGCCAAGTCTCAGGCCGCCATGAATGCCGATAACACCGTC 159222 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 || || || || ||||||| || || || || |||| || | |||||| |||| ||| Sbjct 159221 TTCGACGCCAAGCGATTGATCGGACGCAAATTCACTGATGCCGCCGTCCAAGCTGACATG 159162 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATG---TTGGTGGTA-AACCAT-ATATAGAAGCAA 474629 || |||||||| || || | || |||| |||| || || | Sbjct 159161 AAGCACTGGCCTTTCGGAGTTATCTCCGGACCCGGAGGTACCCCCATCATCAAGGTCGAG 159102 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCA--CCGGAACAAATTTCTTCAATGGTTTTAGC 474687 |||| | || ||| | || | |||| | ||| |||| ||| |||||| | | Sbjct 159101 TACAAG--GGAGAATCCAA--GACCTTCAAGGCCGAAGAAATCAGTTCCATGGTTCTTAC 159046 Query 474688 CAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAA-GAAGTAACTGATGCAGTAATT 474745 || ||||| | | | |||| |||| ||||| ||| ||||| | | || || | Sbjct 159045 GAAGATGAAGGACATTGCCGAG-GCATA-CTTGGGCAAGGAAGTCAAGAACGCTGTTGTC 158988 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || || || || || || || ||||| |||||||| || || ||||| ||| ||| Sbjct 158987 ACCGTACCTGCTTACTTCAACGACTCTCAGCGTCAAGCTACCAAGGATGCCGGATCCATT 158928 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 | || ||||||||| | |||||||| || ||||| || || || || | || || || Sbjct 158927 TCCGGACTTAATGTTCTTCGTATTATCAACGAACCTACCGCCGCTGCCATCGCCTACGGA 158868 Query 474866 CTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918 | || ||||| ||| || ||| ||||| | || || ||| |||||| Sbjct 158867 TTGGACAAGAAGGGAGACGAA-AAG--AATGTCCTCATTTTCGATCTTGGAGG 158818 >seq386 Length=39556 Score = 127 bits (140), Expect = 1e-23 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| || | ||||| ||| ||| || | || || ||| | || Sbjct 12110 CGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAGGTG 12051 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||||| ||||||||||||||||| |||||||| || |||||||||||||||||| Sbjct 12050 CGGCCGTCTTCCAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCT 11991 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| || ||||| || || ||||| ||||||| || || || Sbjct 11990 TCCTTGTCCTGGATCTTGGTCTTCACGTTGTCAATGGTATCAGATGGTTCCACATCCAGT 11931 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||| ||||| ||||| ||||| || || ||||| Sbjct 11930 GTAATAGTCTTACCAGTGAGCGTCTTCACAAAGATTTG 11893 Score = 102 bits (112), Expect = 5e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || || || || || || || || ||| || || ||| || Sbjct 11655 ACGAAGACGAAGGACCAGGTGCAGAGTGGACTCCTTCTGAATATTGTAGTCGCTTAGGGT 11596 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || |||||| | |||||||||||||||||| | | || |||||||| || ||||| Sbjct 11595 CCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGGATTCC 11536 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| |||||||| |||||| |||||||| || | | | | | ||| Sbjct 11535 TTCCTTGTCCTGAATCTTGGTCTTGACATTGTCAATAGTGTCCGAAGGCTCGACATCCAA 11476 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || ||||| ||||| || || ||||| Sbjct 11475 -CGTGATAGTCTTTCCCGTGAGGGTCTTGACAAAGATTTG 11437 Score = 98.7 bits (108), Expect = 6e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| |||||||||||||||||||| | | || |||||||| || |||||||||||| Sbjct 11816 TCTTCCAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGGATTCCTTCCTTG 11757 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || ||||| || || ||||| ||||||| || | || || || || Sbjct 11756 TCCTGGATCTTGGTCTTCACGTTATCAATGGTATCAGACGGTTCAACGTCCAGTGTGATG 11697 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| ||||| ||||| || || ||||| Sbjct 11696 GTCTTACCAGTGAGTGTCTTCACAAAGATTTG 11665 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || | ||||| ||| ||| || | ||| || || ||| || Sbjct 11427 ACGAAGACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTTAGGGT 11368 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || |||||| | |||||||||||||||||| | | || ||||| ||||||||||| Sbjct 11367 CCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGAATTCC 11308 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| || ||||| |||||| ||||| || || | | | | | ||| Sbjct 11307 TTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCGACATCCAA 11248 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| | ||| || |||||||| || Sbjct 11247 -CGTGATTGTCTTGCCGGTCAAAGTTTTTACGAAAATCTG 11209 >seq22 Length=300247 Score = 111 bits (122), Expect = 1e-18 Identities = 125/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||||||||| || || | |||||| || ||| || | ||||| || ||| | || Sbjct 203630 ACGAAGACGAAGCACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAGTC-GCTCAAAG 203572 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | ||| || | ||||||||||||||| |||||||| || ||||| |||||||||| Sbjct 203571 TACGACCATCCTCCAATTGCTTTCCAGCAAATATAAGACGCTGCTGATCGGGAGGAATTC 203512 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG 480714 ||||||||||||| ||||| |||||| ||||| ||||||| Sbjct 203511 CTTCCTTGTCTTGGATCTTGGTCTTGACATTATCAATCGTATCAG 203467 Score = 87.8 bits (96), Expect = 1e-11 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685 ||||||||||||||| || | | ||| |||||||||||||||||||||||||| ||||| Sbjct 203445 TTGCTTTCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGAAT 203386 Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 ||| |||||| ||||| || || | | | | | ||| ||| || || || | Sbjct 203385 CTTGGTCTTGACATTGTCAATGGTGTCGGAAGGCTCGACATCCAA-GGTGATTGTCTTTC 203327 Query 480745 CGGTGAGAGTCTTAACGAAAAT 480766 |||| | || || |||||||| Sbjct 203326 CGGTCAATGTTTTTACGAAAAT 203305 >seq3 Length=497493 Score = 102 bits (112), Expect = 5e-16 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | ||||||||| ||||| ||||||||||||||||||||||| ||||||||||| Sbjct 135320 ATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCAGGAGGGATTCCTTCCTT 135261 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||| || ||||| ||||| |||||||| || Sbjct 135260 GTCCTGGATCTTGGTCTTGACGTTGTCAATAGTGTC 135225 >seq141 Length=126064 Score = 96.9 bits (106), Expect = 2e-14 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || |||||| ||||||| ||| || | ||||||||| ||||| ||||||||||| Sbjct 117106 TTGTAATCACTCAGAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGC 117047 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| || || |||||||||||||| || ||||| ||||| || || || || Sbjct 117046 TGATCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCC 116987 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | | || || || || || || |||||||| ||||| ||||| ||||| Sbjct 116986 GATGGCTCGA-CATCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTG 116931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268132058557652