Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq217 704 0.0 >seq217 Length=78499 Score = 704 bits (780), Expect = 0.0 Identities = 790/1048 (75%), Gaps = 7/1048 (1%) Strand=Plus/Plus Query 160863 CACCTGGGAACAGTTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTG 160922 ||| |||||| | || | |||||| |||| |||||||||||||||||||| | ||||| Sbjct 40568 CACGTGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTG 40627 Query 160923 GTTCGGCGTCCTGATGATTCCCTGCT-TGCTCGCTGCTACCATT-TGTTTCATCATTGCC 160980 |||||| | ||| ||||| || | || || || | ||| || ||||| | ||| Sbjct 40628 GTTCGGTACTATCATG-TTCCCAACTCTTCTTGCCGC-AGCATCATGCTTCATTACTGCA 40685 Query 160981 TTCGTTGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTC 161040 || ||| || || ||||||||||| ||||| || || ||||| || || || || || Sbjct 40686 TTTATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTT 40745 Query 161041 ATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTG 161100 | || || || ||||||||| | || |||| |||||||||| ||||| ||||| || Sbjct 40746 CTTTACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATG 40805 Query 161101 CACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCT 161160 |||||||||||| | |||||||| || ||||||||||| | |||||||| || || Sbjct 40806 CACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCC 40865 Query 161161 TTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGG 161220 | |||| | |||||| | |||||||| | || | | | |||||||| ||||||||| Sbjct 40866 TACCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGG 40925 Query 161221 GAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTC 161280 |||||||| || || || ||||||||||||||||||| || |||| ||| || ||||| Sbjct 40926 GAACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTT 40985 Query 161281 GCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCA 161340 || || || | || || ||||| ||| || | || ||||| |||||| |||| Sbjct 40986 GCAGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGC 41045 Query 161341 ATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 161400 |||||||| || ||| || || ||||||| |||| | |||||||| || ||||||||| Sbjct 41046 ATGCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAAC 41105 Query 161401 ATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTC 161460 || || |||||||| | |||||| ||| || |||||||| || || || ||| ||||| Sbjct 41106 ATCCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTC 41165 Query 161461 AGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAG 161520 || |||||||| || || ||||| || || || | |||||||||||||||||||| Sbjct 41166 TCCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAA 41225 Query 161521 TCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCC 161580 ||| || | || |||||||| || || ||||| || ||||||||||| || || || Sbjct 41226 TCCACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCT 41285 Query 161581 CACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTG 161640 ||||||||||| || ||||| || ||||||||||| || ||||||||||| || | || Sbjct 41286 CACGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTT 41345 Query 161641 CACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGC 161700 ||||||||| | ||| |||||||| | || ||||||| ||| || |||| || | Sbjct 41346 CACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCC 41405 Query 161701 ACCATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGT 161760 |||||||| |||||||| || || ||||||||||||||| || || | || |||| Sbjct 41406 ACCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGA 41465 Query 161761 AAAGTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATG 161820 || |||||||||||||| ||| | |||||||||| | |||||| ||||| || ||| Sbjct 41466 CGTGTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATG 41525 Query 161821 CACGAGCGCAATGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGAG-TCCACTCCTGT 161879 ||||| || |||||||| ||||| |||||||| | ||| ||| ||| | | | ||||| Sbjct 41526 CACGAACGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTGGCGAGATTCTC-CCTGT 41584 Query 161880 GGCACTCCAAGCACCTGCAATCGGTTGA 161907 ||| | | || || || ||| ||||| Sbjct 41585 CGCAATGGAGGCCCCAGCCATC-GTTGA 41611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547739675322840