Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq217 549 6e-152 >seq217 Length=78499 Score = 549 bits (608), Expect = 6e-152 Identities = 723/998 (72%), Gaps = 6/998 (1%) Strand=Plus/Minus Query 17832 GAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGG 17891 ||||| ||||| || || ||||||||||||||||| |||||||| || || | ||||| Sbjct 41566 GAAGCCAAATCAAGAGGAAAGTTATGAGCATTACGTTCGTGCATGACCTCCATTCCAAGA 41507 Query 17892 TTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATG 17951 | || | ||||| || ||| ||||| || | ||| |||| | | | | | Sbjct 41506 TCGGCACGGTTGATTATGTCGGCCCAGGTGTTGATGACACGTCCCTCGGAGTCGATGACA 41447 Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 18011 | ||||||||||||||||| ||||| || || ||||| ||||||| ||||| | ||| Sbjct 41446 GCCTGGTTGAAGTTGAATCCGTTGAGGTTGAAGGCCATGGTGGAGACACCCATGGCGGTG 41387 Query 18012 AGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTA-TTGTT 18070 ||| || | || ||||| ||| |||||||| || ||| | || | ||||| Sbjct 41386 CACCAGATACCCAATACAGGCCAGAGAGCTAAGAAGAAGTGAAGAGCAC-GCGAGTTGTT 41328 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || || || ||||||||||| | |||||||| || ||||| || ||||| || || Sbjct 41327 GAACGACGCGTATTGGAAGATGAGACGTCCAAAGTACCCGTGAGCGGCGACAATGTTGTA 41268 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || || ||||| |||||||| || ||||| | || || || || || ||||| Sbjct 41267 GGTTTCCTCTTCCTGGCCAAACTTGTATCCGTTATTGGTGGATTCGTTTTCGGTGGTTTC 41208 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 | || | ||||||||||||||| |||||||| || | ||| |||| ||| ||||| Sbjct 41207 ACGGATCAAAGAGGAAGTAACAAGAGACCCGTGCATGGCGGAGAACAAAGATCCTCCGAA 41148 Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 || |||||||| ||| |||||| | ||| ||||||||||| ||||| ||||| ||||| Sbjct 41147 GACACCTGCAACTCCGGCCATATGAAGCGGGTGCATAAGGATGTTGTGCTCGGCCTGGAA 41088 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 || |||||||| ||||| || ||||| |||||||||||||| ||||| |||||||| || Sbjct 41087 GACCAACATGAAGTTGAAGGTTCCGCTGATACCAAGAGGCATGCCATCTGAGAAACTTCC 41028 Query 18371 TTGTCCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGC 18430 ||| |||| || || ||| || || | | ||| ||||| || |||||||| | || Sbjct 41027 TTGCCCAATGGGGTAGGTGAGGAAGACAGCGGTGGCGGCTGCAACAGGTGCGGAGAATGC 40968 Query 18431 AACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490 |||| ||||||| || ||||| || || | ||| ||||||||| | || |||||||| Sbjct 40967 AACAAAAATCCAAGGACGCATTCCGAGGCGATACGAAAGTTCCCACTCACGGCCCATGTA 40908 Query 18491 AGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 18550 | || | |||| || ||||| | ||||| | ||| || ||||||||||| || || Sbjct 40907 CGAAGCAACTCCGAGAAGGAAGTGCATCACAACCAATTGGTAGGGTCCTCCGTTGTACAA 40848 Query 18551 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 18610 ||| ||||| | || ||||||||||| | ||||||||||| | ||||||||||| | Sbjct 40847 CCATTCGTCCATGGAGGCAGCTTCCCAAACGGGGTAGAAGTGCATCCCGATTGCGTTGKA 40788 Query 18611 TGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGG 18670 || |||| || | ||| | |||||||| || || || || | | ||| | ||||| Sbjct 40787 AGAAGGGATGACAGACCCGGTGATGATGTTATTACCGTAAAGAAGAGATCCGGCAACAGG 40728 Query 18671 CTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGT 18730 || || || || || ||||| || ||||| || |||| ||||||| | | || || Sbjct 40727 TTCGCGGATTCCGTCAATGTCCACAGGAGGTGCGGCAATAAATGCAGTAATGAAGCATGA 40668 Query 18731 AGCTGCGGTTAAAAGTGCAGGGATCAT--AAGTACCCCAAACCACCCCACGTAGAGGCGG 18788 ||||||| | ||| | |||| ||| |||| || ||||| || | ||| |||||| Sbjct 40667 TGCTGCGGCAAGAAGAGTTGGGAACATGATAGTA--CCGAACCAACCGATGTAAAGGCGG 40610 Query 18789 TTGTTTGTACTCGTAACCCAGTCACATAAACTTTCCCA 18826 |||| || || || | ||||| | || ||||||| Sbjct 40609 TTGTCGGTGCTTGTGATCCAGTTGGAGAATTTTTCCCA 40572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151316425200306