Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq217 572 2e-158 >seq217 Length=78499 Score = 572 bits (634), Expect = 2e-158 Identities = 724/1003 (72%), Gaps = 2/1003 (0%) Strand=Plus/Minus Query 103170 CAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCA 103229 ||| ||| | ||||| || ||||| ||||| ||||| ||||||||||| ||||| || | Sbjct 41568 CAGAAGCCAAATCAAGAGGAAAGTTATGAGCATTACGTTCGTGCATGACCTCCATTCCAA 41509 Query 103230 GACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGA 103289 || | || ||||||| | ||| ||||||||||| | ||||| |||| || | || Sbjct 41508 GATCGGCACGGTTGATTATGTCGGCCCAGGTGTTGATGACACGTCCCTCGGAGTCGATGA 41449 Query 103290 TGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGG 103349 | ||||||||||||||||||||| |||||||| ||||||||| ||||| | |||| Sbjct 41448 CAGCCTGGTTGAAGTTGAATCCGTTGAGGTTGAAGGCCATGGTGGAGACACCCATGGCGG 41389 Query 103350 TGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGT 103409 || |||||||||||| ||| || | ||||||| Sbjct 41388 TGCACCAGATACCCAATACAGGCCAGAGAGCTAAGAAGAAGTGAAGAGCACGCGAGTTGT 41329 Query 103410 TGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGT 103469 |||| || |||||||||||||| | ||| || ||||| || |||||||| || ||||||| Sbjct 41328 TGAACGACGCGTATTGGAAGATGAGACGTCCAAAGTACCCGTGAGCGGCGACAATGTTGT 41269 Query 103470 ATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCT 103529 | || || || || || || |||||||| || | || ||||| |||| || || | Sbjct 41268 AGGTTTCCTCTTCCTGGCCAAACTTGTATCCGTTATTGGTGGATTCGTTTTCGGTGGTTT 41209 Query 103530 CACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGA 103589 |||| | || ||||| |||||||| || |||||||| || ||||| || || |||| Sbjct 41208 CACGGATCAAAGAGGAAGTAACAAGAGACCCGTGCATGGCGGAGAACAAAGATCCTCCGA 41149 Query 103590 AGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGA 103649 |||| || ||||| || ||| || | |||||||| || ||||| || ||||| |||| Sbjct 41148 AGACACCTGCAACTCCGGCCATATGAAGCGGGTGCATAAGGATGTTGTGCTCGGCCTGGA 41089 Query 103650 AGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAAC 103709 |||||| |||| ||||||||||||| ||||| | |||||| |||| ||||| | Sbjct 41088 AGACCAACATGAAGTTGAAGGTTCCGCTGATACCAAGAGGCATGCCATCTGAGAAACTTC 41029 Query 103710 CTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATG 103769 |||| |||| ||||||| | ||| || |||| || || |||||||| || ||| ||| Sbjct 41028 CTTGCCCAATGGGGTAGGTGAGGAAGACAGCGGTGGCGGCTGCAACAGGTGCGGAGAATG 40969 Query 103770 CGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATAT 103829 | ||| | ||||| || ||||| || || || || || | |||||||||||| ||||| | Sbjct 40968 CAACAAAAATCCAAGGACGCATTCCGAGGCGATACGAAAGTTCCCACTCACGGCCCATGT 40909 Query 103830 ATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACA 103889 | | | | || | |||||||| | || || | |||| | || || ||||| |||| Sbjct 40908 ACGAAGCAACTCCGAGAAGGAAGTGCATCACAACCAATTGGTAGGGTCCTCCGTTGTACA 40849 Query 103890 GCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGG 103949 ||| || || | || || |||||||||| ||| |||||||| | || ||||||||| Sbjct 40848 ACCATTCGTCCATGGAGGCAGCTTCCCAAACGGGGTAGAAGTGCATCCCGATTGCGTTGK 40789 Query 103950 AGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGG 104009 | || || | || | || | ||||||||| |||||||| | || || || || || | Sbjct 40788 AAGAAGGGATGACAGACCCGGTGATGATGTTATTACCGTAAAGAAGAGATCCGGCAACAG 40729 Query 104010 GTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAAGCA-G 104068 |||| || || ||||| || || || |||||||| || | || ||| |||||||| | Sbjct 40728 GTTCGCGGATTCCGTCAATGTCCACAGGAGGTGCGGCAATAAATGCAGTAATGAAGCATG 40669 Query 104069 ATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGG 104128 ||| | || || | |||||||||| ||| | |||||||||||| | || || ||| Sbjct 40668 ATGCT-GCGGCAAGAAGAGTTGGGAACATGATAGTACCGAACCAACCGATGTAAAGGCGG 40610 Query 104129 TTGTTTGTCGATGTAACCCACTCGCAGAAGTTATCCCACGAGG 104171 |||| || ||| | ||| | | |||| || ||||||| || Sbjct 40609 TTGTCGGTGCTTGTGATCCAGTTGGAGAATTTTTCCCACGTGG 40567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633504897106920