Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq217 475 1e-129 >seq217 Length=78499 Score = 475 bits (526), Expect = 1e-129 Identities = 679/953 (71%), Gaps = 6/953 (1%) Strand=Plus/Minus Query 21477 TCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGG 21536 ||||| || ||||| || || || || || ||||| ||||| | ||||| | ||||||| Sbjct 41557 TCAAGAGGAAAGTTATGAGCATTACGTTCGTGCATGACCTCCATTCCAAGATCGGCACGG 41498 Query 21537 TTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTA 21596 || | ||||| |||||||||||||| || |||| || | | | | || ||||| Sbjct 41497 TTGATTATGTCGGCCCAGGTGTTGATGACACGTCCCTCGGAGTCGATGACAGCCTGGTTG 41438 Query 21597 AAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATA 21656 |||||||| || || | |||||| |||||||| || || || | || | |||| ||| Sbjct 41437 AAGTTGAATCCGTTGAGGTTGAAGGCCATGGTGGAGACACCCATGGCGGTGCACCAGATA 41378 Query 21657 CCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCA 21716 || | ||||||||| ||| | ||||| |||||| ||| || || || || || Sbjct 41377 CCCAATACAGGCCAGAGAGCTAAGAAGAAGTGAAGAGCACGCGAGTTGTTGAACGACGCG 41318 Query 21717 TATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCC 21776 ||||||||||| || || ||||| || |||||||| || ||||| ||||| || || || Sbjct 41317 TATTGGAAGATGAGACGTCCAAAGTACCCGTGAGCGGCGACAATGTTGTAGGTTTCCTCT 41258 Query 21777 TCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGT 21836 || || ||||||||||| || | || || | | ||| || || ||||| || | Sbjct 41257 TCCTGGCCAAACTTGTATCCGTTATTGGTGGATTCGTTTTCGGTGGTTTCACGGATCAAA 41198 Query 21837 GACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCC 21896 || || || || || |||||||| || ||||||||| || || || || || || Sbjct 41197 GAGGAAGTAACAAGAGACCCGTGCATGGCGGAGAACAAAGATCCTCCGAAGACACCTGCA 41138 Query 21897 ACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATG 21956 || || ||| |||| || |||||||| || |||||||| |||||||| |||| |||| Sbjct 41137 ACTCCGGCCATATGAAGCGGGTGCATAAGGATGTTGTGCTCGGCCTGGAAGACCAACATG 41078 Query 21957 TAGTTGAAGGTGCCG--GATATCCCCAAG-GGCATAGCATCAGAAAAAGAGCCCTGTCCA 22013 |||||||||| ||| |||| ||||| ||||| |||| || ||| || || ||| Sbjct 41077 AAGTTGAAGGTTCCGCTGATA---CCAAGAGGCATGCCATCTGAGAAACTTCCTTGCCCA 41021 Query 22014 AACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAG 22073 | || || ||||| ||||| || || || || ||||| || ||| | |||||||| Sbjct 41020 ATGGGGTAGGTGAGGAAGACAGCGGTGGCGGCTGCAACAGGTGCGGAGAATGCAACAAAA 40961 Query 22074 ATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG 22133 ||||| || | ||| || || ||||| |||||||||||| || |||||||| | | Sbjct 40960 ATCCAAGGACGCATTCCGAGGCGATACGAAAGTTCCCACTCACGGCCCATGTACGAAGCA 40901 Query 22134 ACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCA 22193 || || | |||||||| | || | |||| | || || |||||||||| |||||| Sbjct 40900 ACTCCGAGAAGGAAGTGCATCACAACCAATTGGTAGGGTCCTCCGTTGTACAACCATTCG 40841 Query 22194 TCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGA 22253 || | | ||||||||||||| ||||||||||| | ||||| || || || Sbjct 40840 TCCATGGAGGCAGCTTCCCAAACGGGGTAGAAGTGCATCCCGATTGCGTTGKAAGAAGGG 40781 Query 22254 ACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGG 22313 | ||| | || | |||||||| ||||| || | || || || || || ||||| ||| Sbjct 40780 ATGACAGACCCGGTGATGATGTTATTACCGTAAAGAAGAGATCCGGCAACAGGTTCGCGG 40721 Query 22314 ATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCG 22373 ||||| || ||||| ||||| |||||| ||| ||| || |||| || || | || ||| Sbjct 40720 ATTCCGTCAATGTCCACAGGAGGTGCGGCAATAAATGCAGTAATGAAGCATGATGCTGCG 40661 Query 22374 GCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 ||||| || || | ||| | |||||||| || | ||||| ||||| Sbjct 40660 GCAAGAAGAGTTGGGAACATGATAGTACCGAACCAACCGATGTAAAGGCGGTT 40608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146206091894220