Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq217 508 7e-139 >seq217 Length=78499 Score = 508 bits (562), Expect = 7e-139 Identities = 692/964 (72%), Gaps = 2/964 (0%) Strand=Plus/Minus Query 124044 CAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCA 124103 |||| || | || || || ||||| || ||||| | ||| ||||| || ||||| || | Sbjct 41568 CAGAAGCCAAATCAAGAGGAAAGTTATGAGCATTACGTTCGTGCATGACCTCCATTCCAA 41509 Query 124104 AGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAA 124163 | || | ||| | | || |||| || || || ||| | | || | | Sbjct 41508 GATCGGCACGGTTGATTATGTCGGCCCAGGTGTTGATGACACGTCCCTCGGAGTCGATGA 41449 Query 124164 CTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGG 124223 | | ||||| |||||||| || || | |||||| ||||| ||| ||| |||||| | || Sbjct 41448 CAGCCTGGTTGAAGTTGAATCCGTTGAGGTTGAAGGCCATGGTGGAGACACCCATGGCGG 41389 Query 124224 TTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGT 124283 | |||| | || | ||||| | | |||| ||||||||||||| | ||||||| Sbjct 41388 TGCACCAGATACCCAATACAGGCCAGAGAGCTAAGAAGAAGTGAAGAGCACGCGAGTTGT 41329 Query 124284 TGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGT 124343 |||| || || || |||||||| ||||| |||||||| ||||| || || || ||||||| Sbjct 41328 TGAACGACGCGTATTGGAAGATGAGACGTCCAAAGTACCCGTGAGCGGCGACAATGTTGT 41269 Query 124344 ATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTT 124403 | ||||| ||||| || || ||||| || || | || || || | || || |||| Sbjct 41268 AGGTTTCCTCTTCCTGGCCAAACTTGTATCCGTTATTGGTGGATTCGTTTTCGGTGGTTT 41209 Query 124404 CTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGA 124463 | | ||| | ||| || ||||||||||| || ||||| || ||||| ||||||||||||| Sbjct 41208 CACGGATCAAAGAGGAAGTAACAAGAGACCCGTGCATGGCGGAGAACAAAGATCCTCCGA 41149 Query 124464 ACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGA 124523 | | ||||| ||||| ||||| || | || ||||| || ||||| ||||| || |||| Sbjct 41148 AGACACCTGCAACTCCGGCCATATGAAGCGGGTGCATAAGGATGTTGTGCTCGGCCTGGA 41089 Query 124524 AAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAAC 124583 | || ||||| |||||||| || || ||||||||| ||||| ||||| ||||| | Sbjct 41088 AGACCAACATGAAGTTGAAGGTTCCGCTGATACCAAGAGGCATGCCATCTGAGAAACTTC 41029 Query 124584 CCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAG 124643 | || |||| ||||| | ||| |||||| || || | || ||||| || | | Sbjct 41028 CTTGCCCAATGGGGTAGGTGAGGAAGACAGCGGTGGCGGCTGCAACAGGTGCGGAGAATG 40969 Query 124644 CAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGT 124703 ||||| | ||||||||||||||||| | | || || |||||||||| | ||||||| Sbjct 40968 CAACAAAAATCCAAGGACGCATTCCGAGGCGATACGAAAGTTCCCACTCACGGCCCATGT 40909 Query 124704 ATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACA 124763 | | | || || | ||||||||| | | ||||| || || || || || || |||| Sbjct 40908 ACGAAGCAACTCCGAGAAGGAAGTGCATCACAACCAATTGGTAGGGTCCTCCGTTGTACA 40849 Query 124764 ACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTG 124823 ||||||| || | | || |||||||| | ||||||||||| | ||||| ||||| Sbjct 40848 ACCATTCGTCCATGGAGGCAGCTTCCCAAACGGGGTAGAAGTGCATCCCGATTGCGTTGK 40789 Query 124824 ATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAA-AGAACCCGCTACT 124882 | || || | || | || | ||||||||| ||||| || ||||| ||| || || || Sbjct 40788 AAGAAGGGATGACAGACCCGGTGATGATGTTATTACCGTA-AAGAAGAGATCCGGCAACA 40730 Query 124883 GGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAAACAT 124942 ||||| | ||||||||| || || ||||||||||| |||||||||||| ||||| ||| Sbjct 40729 GGTTCGCGGATTCCGTCAATGTCCACAGGAGGTGCGGCAATAAATGCAGTAATGAAGCAT 40670 Query 124943 GCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTG 125002 | |||||| | || | ||| | ||| | | ||| |||||||| | |||| | | Sbjct 40669 GATGCTGCGGCAAGAAGAGTTGGGAACATGATAGTACCGAACCAACCGATGTAAAGGCGG 40610 Query 125003 TTGT 125006 |||| Sbjct 40609 TTGT 40606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578990446009480