Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq217 603 1e-167 >seq217 Length=78499 Score = 603 bits (668), Expect = 1e-167 Identities = 711/963 (74%), Gaps = 0/963 (0%) Strand=Plus/Minus Query 26729 CAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAA 26788 ||| ||| | ||| | ||||| ||||| || || | |||||| || ||||| | ||||| Sbjct 41568 CAGAAGCCAAATCAAGAGGAAAGTTATGAGCATTACGTTCGTGCATGACCTCCATTCCAA 41509 Query 26789 GACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCA 26848 || | |||||||||| | ||| ||||| ||||||| ||||| |||| || || || | Sbjct 41508 GATCGGCACGGTTGATTATGTCGGCCCAGGTGTTGATGACACGTCCCTCGGAGTCGATGA 41449 Query 26849 CAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGG 26908 ||| ||| ||||||||||| |||||||| ||||| ||||| ||||| ||||| | |||| Sbjct 41448 CAGCCTGGTTGAAGTTGAATCCGTTGAGGTTGAAGGCCATGGTGGAGACACCCATGGCGG 41389 Query 26909 TGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGT 26968 || ||||||| || | || ||||| ||| | ||||||||| | | ||| ||||||| Sbjct 41388 TGCACCAGATACCCAATACAGGCCAGAGAGCTAAGAAGAAGTGAAGAGCACGCGAGTTGT 41329 Query 26969 TGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGT 27028 |||| || || ||||||||||| | ||| || ||||| || || || ||||| ||||||| Sbjct 41328 TGAACGACGCGTATTGGAAGATGAGACGTCCAAAGTACCCGTGAGCGGCGACAATGTTGT 41269 Query 27029 AGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCT 27088 |||| || ||||| || || ||||| || || | || || || |||| || || | Sbjct 41268 AGGTTTCCTCTTCCTGGCCAAACTTGTATCCGTTATTGGTGGATTCGTTTTCGGTGGTTT 41209 Query 27089 CACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGA 27148 |||||| | || || ||||| ||| |||||||| || ||||| | |||||| |||| Sbjct 41208 CACGGATCAAAGAGGAAGTAACAAGAGACCCGTGCATGGCGGAGAACAAAGATCCTCCGA 41149 Query 27149 ATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGA 27208 | || || ||||| ||| ||| || | ||||||||||||||| ||||| || ||||||| Sbjct 41148 AGACACCTGCAACTCCGGCCATATGAAGCGGGTGCATAAGGATGTTGTGCTCGGCCTGGA 41089 Query 27209 ATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAAC 27268 | || | |||| |||| || || || ||||||||||||||| |||| |||||| | Sbjct 41088 AGACCAACATGAAGTTGAAGGTTCCGCTGATACCAAGAGGCATGCCATCTGAGAAACTTC 41029 Query 27269 CTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATG 27328 |||| || | || ||| |||||| || || | || || || || || || || ||| Sbjct 41028 CTTGCCCAATGGGGTAGGTGAGGAAGACAGCGGTGGCGGCTGCAACAGGTGCGGAGAATG 40969 Query 27329 CTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATAT 27388 | ||| | ||||| |||||||| || | ||||| || |||||||||||||| ||||| | Sbjct 40968 CAACAAAAATCCAAGGACGCATTCCGAGGCGATACGAAAGTTCCCACTCACGGCCCATGT 40909 Query 27389 AAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACA 27448 | | | | |||| ||||||||| | || |||| |||| | || || ||||| |||| Sbjct 40908 ACGAAGCAACTCCGAGAAGGAAGTGCATCACAACCAATTGGTAGGGTCCTCCGTTGTACA 40849 Query 27449 ACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTG 27508 |||| || || | || || |||||||| | ||||||||||| | |||||||| || Sbjct 40848 ACCATTCGTCCATGGAGGCAGCTTCCCAAACGGGGTAGAAGTGCATCCCGATTGCGTTGK 40789 Query 27509 AACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGG 27568 || |||| || | || | |||||||| || || || | ||| || || ||||| | Sbjct 40788 AAGAAGGGATGACAGACCCGGTGATGATGTTATTACCGTAAAGAAGAGATCCGGCAACAG 40729 Query 27569 GTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAAGCAGA 27628 |||| || || |||||||| || || || ||||| || || ||||| ||||||||| Sbjct 40728 GTTCGCGGATTCCGTCAATGTCCACAGGAGGTGCGGCAATAAATGCAGTAATGAAGCATG 40669 Query 27629 CAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGT 27688 | ||| || | || ||||||| ||| | |||||||||||| | || | |||| Sbjct 40668 ATGCTGCGGCAAGAAGAGTTGGGAACATGATAGTACCGAACCAACCGATGTAAAGGCGGT 40609 Query 27689 TGT 27691 ||| Sbjct 40608 TGT 40606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665485257770680