Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq108 132 6e-26 seq39 107 2e-18 seq3 87.8 2e-12 >seq108 Length=147947 Score = 132 bits (146), Expect = 6e-26 Identities = 389/595 (65%), Gaps = 5/595 (1%) Strand=Plus/Plus Query 75145 TTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCAT 75204 |||||||||| | |||||||| |||||| ||| | | |||| |||||| || Sbjct 12373 TTACTTTGGTTTTAAAACCCTCGAGAAGTCCTACTTGCTYAAGCTCAATGGCAAGATCGC 12432 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| ||||||| |||||| ||||| ||||| | || || ||||| || || || || Sbjct 12433 AGAACGACCACAGTGCATGTTGATGCGCGTCGCCGTTGGAATTCACGGAGATGATATCGA 12492 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAAC 75324 ||||||||||| || | | || || | |||| || || ||||| || Sbjct 12493 GCGGGTCTTGGAGACCTATAAAGGCCTCTCGGAACGATACTTCACCCATGCCACACCGAC 12552 Query 75325 CCTCTTCAATGCTGGTA-CACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 ||||||||| || || | || ||| || ||||||||| ||| || || | | | | Sbjct 12553 CCTCTTCAACGCCGGAACCAACAA-CCCTCAGATGTCCTCTTGTTTTCTGTTGACAATGA 12611 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 |||| ||||| ||| | || ||||| | || || | | || || || || |||| Sbjct 12612 AGGAAGACTCCATCGATGGCATCTACGACACACTCAAGAGCTGCGCCGTGATTTCGAAGT 12671 Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 75503 || || || ||||| || | ||| | | | |||| |||||| ||||| | Sbjct 12672 ACGCAGGTGGAATTGGTCTGGCAACCCACAACATTCGTGCCAGTAAATCCTACATTCGTG 12731 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | || || ||| ||| |||| || | || ||| | || || || ||| ||| || Sbjct 12732 GAACCAACGGTACATCCAATGGCATCGTCCCCATGTTGCGTGTCTTCAACAACACCGCCM 12791 Query 75564 GCTATGTAAATCAAG--CGGGGC-GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCAT 75620 | || || |||| | | ||| |||||||| ||| || | |||||||| || | Sbjct 12792 GATACGTCGATCAGGGTGGAGGCAAGCGCAAGGGAAGCATTGCCATTTACTTGGAGCCCT 12851 Query 75621 GGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTC 75680 |||| || |||||| | | || | || | || ||||| || |||||| | || Sbjct 12852 GGCACGCAGATATCTTTGCCTTTTTAGATCTTCGCAAAAACCACGGGAACGAAGCCGATC 12911 Query 75681 GGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGT 75735 | | ||| | |||| || || ||||| || ||||| |||||| | || || Sbjct 12912 GCGCACGTGATTTGTTTTACTCTCTCTGGATCCCTGACCTGTTCATGGAACGTGT 12966 >seq39 Length=234218 Score = 107 bits (118), Expect = 2e-18 Identities = 279/421 (66%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 175285 ATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGA 175344 || |||||||| | | |||| | || || ||||| || ||||| || | || | Sbjct 140501 ATTCCCCGAGGTGTCATTCTGGATGGACCTCCCGGTACTGGTAAGACTCTTTTGGCTAAA 140442 Query 175345 GCCATCGCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTC-TGCCGCAAACTTTGTG 175401 || | || || ||| | |||||| |||||| || | | | ||| | |||||| Sbjct 140441 GCAGTTGCTGGAGAAGCTGGTGTCCCCTTCATCTCCATTAGTGGTTCCG---AGTTTGTG 140385 Query 175402 GAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAA 175461 ||||||||||||||||| |||||| | ||||||||| |||||| | || | Sbjct 140384 GAGATGTTTGTTGGTGTAGGTGCCTCCCGTGTTCGCGATATCTTTGGACAAGCAAAGAAG 140325 Query 175462 AATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCT 175521 || || || ||| |||| || |||||||| ||||| || || ||||| ||||| Sbjct 140324 AAYGCTCCGTGCATTATCTTTATCGATGAGATCGATGCTGTTGGACGTCAACGTGGCGCT 140265 Query 175522 GGTGGTATGCCAGC--AAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGA 175579 | ||| |||| || ||| || || | ||||| || | |||||| | | |||| Sbjct 140264 G--GGTTTGCCGGCGGAAACGATGAACGTGAACAGACCGTGAATCAAATTTTGGTGGAGA 140207 Query 175580 TGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATA 175639 ||||||| || || | | || || | |||||| || || || || || || | Sbjct 140206 TGGATGGATTCGATGGAAATCCCGGTATCATCACTATTGCTGCTACCAACCGTGTCGACA 140147 Query 175640 TCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGATCCAAGTGGGTCTTC 175699 | | ||| | || ||| | || || || || |||||||| ||| || |||| |||| Sbjct 140146 TTTTGGATCAAGCTCTCTTGCGTCCCGGACGATTTGATCGKAAGGTCACCGTGGACCTTC 140087 Query 175700 C 175700 | Sbjct 140086 C 140086 Score = 107 bits (118), Expect = 2e-18 Identities = 253/380 (67%), Gaps = 16/380 (4%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || ||||||||||||||| || | || || || | ||| || ||| Sbjct 143013 CCTGGAACCGGTAAGACCCTCCTCGCCAAGGCTGTTGCTGGAGAGGCGGGTGTTCCGTTC 143072 Query 175375 ATC-----CAGTGCT-CTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAA 175428 ||| ||||| | ||| | || || |||||||| || ||||| || ||| Sbjct 143073 ATCTCCATCAGTGGTTCTG------AATTCGTTGAGATGTTCGTCGGTGTTGGAGCCTCT 143126 Query 175429 AGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGAT 175488 | || || ||| | || | | ||| | || || || ||| ||||||| ||| Sbjct 143127 CGAGTCCGTGATATTTTCGGACAAGCCAAGAAGAACGCCCCTTGCATTATCTTCATCGAT 143186 Query 175489 GAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTG--GTATGCCAGCAAATGACGAGA 175546 || |||||||| || || ||||| | | ||| | | | || |||||||| Sbjct 143187 GAAATTGATGCCGTCGGTCGCCAACGTGGAGGTGGCCAAGGAGG--AGGTAATGACGAAC 143244 Query 175547 GAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCA 175606 | |||||||||||||| || | || ||||||||||| |||||| | | | || | Sbjct 143245 GTGAACAAACAATTAACCAGATCCTTGTTGAGATGGATGGTTTTGACGGTAACCCMGGAA 143304 Query 175607 TTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGG 175666 || | ||||| ||||| ||||| | |||||||| ||| | || | ||||| || | Sbjct 143305 TTATTACCATTGCCGCCACCAATCGTATCGATATCCTYGATCAAGCTTTGCTTCGACCTG 143364 Query 175667 GTCGTTTTGATCGCAAGATC 175686 ||||||| ||||| ||| || Sbjct 143365 GTCGTTTCGATCGAAAGGTC 143384 >seq3 Length=497493 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 75884 GCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGT 75943 || ||||| |||| || | || || ||||| || || ||||| || |||||||| | Sbjct 139671 GCAATTCTGGAATCCCAAATCGAAACAGGAACTCCTTACATGCTATATAAGGATGCCGCT 139730 Query 75944 AACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAA 76003 || | || ||||||||||||||| | |||||||| | || ||||| ||||| ||| Sbjct 139731 AATGAAAAAAGTAACCAAAAGAATATTGGAACAATTCAATGCAGTAATCTATGCACAGAA 139790 Query 76004 ATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCA 76051 ||| | | || || || | || ||| ||||| |||||| | ||| Sbjct 139791 ATTATCCAATATACGGACGAAGAAGAGGTTGCTGTATGCAATCTTGCA 139838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596561404625120