Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq217 430 2e-115 >seq217 Length=78499 Score = 430 bits (476), Expect = 2e-115 Identities = 688/986 (70%), Gaps = 2/986 (0%) Strand=Plus/Minus Query 7880 TCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCA 7939 |||| |||| || || || | || ||||| || ||||| | ||| ||||| || |||| Sbjct 41574 TCTCGCCAGAAGCCAAATCAAGAGGAAAGTTATGAGCATTACGTTCGTGCATGACCTCCA 41515 Query 7940 TACCTAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACAT 7999 | || | | || | ||| | || ||| |||| || |||| || | | Sbjct 41514 TTCCAAGATCGGCACGGTTGATTATGTCGGCCCAGGTGTTGATGACACGTCCCTCGGAGT 41455 Query 8000 CAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCA 8059 | | || | ||||| ||||| |||||||| ||||| || ||||| ||| | | ||||| Sbjct 41454 CGATGACAGCCTGGTTGAAGTTGAATCCGTTGAGGTTGAAGGCCATGGTGGAGACACCCA 41395 Query 8060 TAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTAC 8119 | | || |||| | || | || || | ||| | ||||||||||||| | Sbjct 41394 TGGCGGTGCACCAGATACCCAATACAGGCCAGAGAGCTAAGAAGAAGTGAAGAGCACGCG 41335 Query 8120 TGTTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAA 8179 |||||| ||||| || || |||||||| | | |||||||| || ||||| || |||| Sbjct 41334 AGTTGTTGAACGACGCGTATTGGAAGATGAGACGTCCAAAGTACCCGTGAGCGGCGACAA 41275 Query 8180 TATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAG 8239 | || ||||| || ||||| || |||||||| || || | || || || | ||| | Sbjct 41274 TGTTGTAGGTTTCCTCTTCCTGGCCAAACTTGTATCCGTTATTGGTGGATTCGTTTTCGG 41215 Query 8240 TTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATC 8299 | || || | ||| | ||| || ||||| | ||| |||||||| || ||| | |||| Sbjct 41214 TGGTTTCACGGATCAAAGAGGAAGTAACAAGAGACCCGTGCATGGCGGAGAACAAAGATC 41155 Query 8300 CACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTG 8359 | ||||| | |||||| || || |||||||| | || |||||||| ||||| ||||| | Sbjct 41154 CTCCGAAGACACCTGCAACTCCGGCCATATGAAGCGGGTGCATAAGGATGTTGTGCTCGG 41095 Query 8360 CTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGA 8419 | ||||| || ||||||||||| || || || ||||| |||||||| ||||| |||| Sbjct 41094 CCTGGAAGACCAACATGAAGTTGAAGGTTCCGCTGATACCAAGAGGCATGCCATCTGAGA 41035 Query 8420 ATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCAC 8479 | || || |||| || || | ||| || ||| || || | || || || Sbjct 41034 AACTTCCTTGCCCAATGGGGTAGGTGAGGAAGACAGCGGTGGCGGCTGCAACAGGTGCGG 40975 Query 8480 TATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTAC 8539 |||| ||| | ||||| || | ||| || | ||| || || | ||||||| | | Sbjct 40974 AGAATGCAACAAAAATCCAAGGACGCATTCCGAGGCGATACGAAAGTTCCCACTCACGGC 40915 Query 8540 CCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGT 8599 ||||||| | || || ||| | ||||||||| | | |||||| || || || ||||||| Sbjct 40914 CCATGTACGAAGCAACTCCGAGAAGGAAGTGCATCACAACCAATTGGTAGGGTCCTCCGT 40855 Query 8600 TATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAG 8659 | |||||||| || || | | |||||||||||||| ||| |||||||| | || || | Sbjct 40854 TGTACAACCATTCGTCCATGGAGGCAGCTTCCCAAACGGGGTAGAAGTGCATCCCGATTG 40795 Query 8660 CGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTG 8719 ||||| |||| || | ||||| || | ||||||||| || || || | | || || | Sbjct 40794 CGTTGKAAGAAGGGATGACAGACCCGGTGATGATGTTATTACCGTAAAGAAGAGATCCGG 40735 Query 8720 CAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAA 8779 |||||||||| || || ||||| || || ||||| || || ||||||||||| || | Sbjct 40734 CAACAGGTTCGCGGATTCCGTCAATGTCCACAGGAGGTGCGGCAATAAATGCAGTAATGA 40675 Query 8780 AGCAAGTAGCAGCAGCTAACAAG-CAAGGAATCATTAGAACTCCAAACCAACCGACATAA 8838 |||| | || || || || ||| || | ||| | | || |||||||||| ||| Sbjct 40674 AGCATGATGCTGCGGC-AAGAAGAGTTGGGAACATGATAGTACCGAACCAACCGATGTAA 40616 Query 8839 AGTCTGTTGTTTGTACTTGTAACCCA 8864 || | ||||| || ||||| | ||| Sbjct 40615 AGGCGGTTGTCGGTGCTTGTGATCCA 40590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615853939590280