Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq217 619 1e-172 >seq217 Length=78499 Score = 619 bits (686), Expect = 1e-172 Identities = 749/1015 (74%), Gaps = 5/1015 (0%) Strand=Plus/Plus Query 165746 AAGGCG-CAT--CTACCTGGGAATCCTTCTGCGAATGGGTTACCAGCACAAATAACCGTC 165802 |||||| ||| | || |||||| |||| | | ||| | || ||||| | ||||| | Sbjct 40555 AAGGCGACATTGCCACGTGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCC 40614 Query 165803 TGTATGTCGGTTGGTTTGGTACGCTGATGATTCCAACTCTGTTGGCAGCAACTATC-TGC 165861 | || |||||||||| ||||| | ||| | |||||||| | || ||| | ||| ||| Sbjct 40615 TTTACATCGGTTGGTTCGGTACTATCATGTTCCCAACTCTTCTTGCCGCAGC-ATCATGC 40673 Query 165862 TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTC 165921 ||||| || || || || || || ||||||||||| ||||| ||||| ||||| || Sbjct 40674 TTCATTACTGCATTTATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTT 40733 Query 165922 GCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAAC 165981 || || ||||| | || ||||| ||||||||| | || | || | || |||| |||| Sbjct 40734 GCCGGATCTCTTCTTTACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAAC 40793 Query 165982 GCAATTGGTCTACACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTAT 166041 ||||| || | |||||||| ||| | |||||||| || || | ||||||||| | || Sbjct 40794 GCAATCGGGATGCACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTAC 40853 Query 166042 AACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATG 166101 ||||| || || | |||| ||||||| | |||||||| | || | | | |||||| Sbjct 40854 AACGGAGGACCCTACCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATG 40913 Query 166102 GGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTAC 166161 || |||||||||||||| || || || || || |||||||| ||||| | |||||| | | Sbjct 40914 GGCCGTGAGTGGGAACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTC 40973 Query 166162 TCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGT 166221 || ||||| || || || || | || || ||||| || || | || ||||| ||| Sbjct 40974 TCCGCACCTGTTGCAGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGT 41033 Query 166222 TTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAA 166281 ||||| |||| ||||| || || ||| ||||| ||||||| ||||||||||||||| Sbjct 41034 TTCTCAGATGGCATGCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAG 41093 Query 166282 GCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGT 166341 || |||||||| || || ||||| || | |||||| ||| ||||| || || || || Sbjct 41094 GCCGAGCACAACATCCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGA 41153 Query 166342 GGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACG 166401 || |||||| || |||||||| | | |||||||| ||| | | | || || Sbjct 41154 GGATCTTTGTTCTCCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACC 41213 Query 166402 ACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAAC 166461 || |||| ||||||| || |||| |||||||| || || ||||| ||||| |||||| Sbjct 41214 ACCGAAAACGAATCCACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAAC 41273 Query 166462 ATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAAC 166521 || || |||||||| || ||||| || ||| | |||||||||||||| || ||||||||| Sbjct 41274 ATTGTCGCCGCTCACGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAAC 41333 Query 166522 TCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCC 166581 || || | | ||||||||| | ||| |||||||| | || ||||||| ||||||| Sbjct 41334 TCGCGTGCTCTTCACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCC 41393 Query 166582 CTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTT 166641 | || |||||||| ||||| |||||||| ||||| ||||||||||||||| | || | Sbjct 41394 ATGGGTGTCTCCACCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATC 41453 Query 166642 GATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGT 166701 || |||| ||||| | ||||||||||| || | | ||||| || | ||| || Sbjct 41454 GACTCCGAGGGACGTGTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGA 41513 Query 166702 ATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCTGCTG 166756 ||||| || ||||| || ||||| || || ||||| || || || | ||| ||| Sbjct 41514 ATGGAGGTCATGCACGAACGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTG 41568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561240289855600