Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq217 475 1e-129 >seq217 Length=78499 Score = 475 bits (526), Expect = 1e-129 Identities = 679/953 (71%), Gaps = 6/953 (1%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACA 41320 ||||| ||||| | || |||||||| | ||| | || || |||||||| || Sbjct 40608 AACCGCCTTTACATCGGTTGGTTCGGTACTATCATGTTCCCAACTCTTCTTGCCGCAGCA 40667 Query 41321 ACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGAA 41380 | || || |||| || ||| ||| |||||| ||||| ||||| || |||||||| ||| Sbjct 40668 TCATGCTTCATTACTGCATTTATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAA 40727 Query 41381 CCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGC 41440 || || || || || || | || ||||| |||||||| | || | ||| | || Sbjct 40728 CCTGTTGCCGGATCTCTTCTTTACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCT 40787 Query 41441 AGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGG 41500 || || ||||| | ||||||||||| ||||||||||||| | | || |||||| Sbjct 40788 TMCAACGCAATCGGGATGCACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGG 40847 Query 41501 CTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCT 41560 |||||||||| || || | |||| | || | |||||||| | || || | | Sbjct 40848 TTGTACAACGGAGGACCCTACCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCG 40907 Query 41561 TACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTT 41620 |||||||| || |||||||||||| ||||| || || ||| | || ||||| |||||| Sbjct 40908 TACATGGGCCGTGAGTGGGAACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTT 40967 Query 41621 GCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAG 41680 || | ||| || ||||| || || || || ||||| ||||| || || |||| || Sbjct 40968 GCATTCTCCGCACCTGTTGCAGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAA 41027 Query 41681 GGCTCTTTTTCTGATGCTATGCC-CTTGGGGATATC--CGGCACCTTCAACTACATGCTG 41737 || ||| || |||| ||||| ||||| |||| ||| |||||||||| |||| || Sbjct 41028 GGAAGTTTCTCAGATGGCATGCCTCTTGG---TATCAGCGGAACCTTCAACTTCATGTTG 41084 Query 41738 GTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGC 41797 || |||||||| |||||||| || |||||||| || |||| ||| || || || || Sbjct 41085 GTCTTCCAGGCCGAGCACAACATCCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGT 41144 Query 41798 GTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATT 41857 || || || || ||||||||| || |||||||| || || || || || | || Sbjct 41145 GTCTTCGGAGGATCTTTGTTCTCCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATC 41204 Query 41858 CGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAG 41917 ||||| || || ||| | | || || | || ||||||||||| || || || || Sbjct 41205 CGTGAAACCACCGAAAACGAATCCACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAA 41264 Query 41918 ACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGC 41977 || ||||| ||||| || |||||||| || ||||| || || ||||||||||| || Sbjct 41265 ACCTACAACATTGTCGCCGCTCACGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCG 41324 Query 41978 TTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGG 42037 || || || || ||| |||||| ||||| | ||| ||||||||| | ||||| ||| Sbjct 41325 TTCAACAACTCGCGTGCTCTTCACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGG 41384 Query 42038 TTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAA 42097 | | || | || || || |||||||| |||||| | || || |||||||| ||||| Sbjct 41385 TGCACCGCCATGGGTGTCTCCACCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAG 41444 Query 42098 TCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCC 42157 || | | | | || |||| || |||||||||||||| ||||| | ||||||||| Sbjct 41445 GCTGTCATCGACTCCGAGGGACGTGTCATCAACACCTGGGCCGACATAATCAACCGTGCC 41504 Query 42158 AACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGA 42210 | ||||| | ||||| ||||| || || || || || ||||| || ||||| Sbjct 41505 GATCTTGGAATGGAGGTCATGCACGAACGTAATGCTCATAACTTTCCTCTTGA 41557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146212491810696