Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq217 500 2e-137 >seq217 Length=78499 Score = 500 bits (554), Expect = 2e-137 Identities = 700/978 (72%), Gaps = 3/978 (0%) Strand=Plus/Plus Query 42314 ACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTA 42373 ||||||| ||||| | || ||||| ||| | ||| | || ||| || || || Sbjct 40606 ACAACCGCCTTTACATCGGTTGGTTCGGTACTATCATGTTCCCAACTCTTCTTGCCGCAG 40665 Query 42374 CCACCTGTTTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTG 42433 | | || || ||| || || ||||| || ||||| || |||||||| || || || | Sbjct 40666 CATCATGCTTCATTACTGCATTTATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCG 40725 Query 42434 AACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTA 42493 ||||||| | || |||||||| || || || ||||||||| | || | ||| | ||| Sbjct 40726 AACCTGTTGCCGGATCTCTTCTTTACGGTAATAACATCATCACCGGGTCTGTCATCCCTT 40785 Query 42494 GCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAAT 42553 |||||||| || | || || || | | |||||||| || | ||||||| Sbjct 40786 CTTMCAACGCAATCGGGATGCACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAAT 40845 Query 42554 GGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCT 42613 || | ||||| || ||||| || || | || ||| | ||||||||| |||| | | Sbjct 40846 GGTTGTACAACGGAGGACCCTACCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTT 40905 Query 42614 CTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTG 42673 | ||| |||| || || |||||||||||||| || || || ||| | || ||||| |||| Sbjct 40906 CGTACATGGGCCGTGAGTGGGAACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTG 40965 Query 42674 TTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGC 42733 |||| | ||| || ||||| || || || || || |||||||| ||| || |||||| Sbjct 40966 TTGCATTCTCCGCACCTGTTGCAGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGC 41025 Query 42734 AAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGG 42793 |||| ||| |||||||| ||||||||||| || ||| || |||||||||||||||| Sbjct 41026 AAGGAAGTTTCTCAGATGGCATGCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGG 41085 Query 42794 TCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCG 42853 |||||||||| || || ||||| |||||||| || | |||||| || ||||| || | Sbjct 41086 TCTTCCAGGCCGAGCACAACATCCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTG 41145 Query 42854 TATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGC 42913 | || || || || |||||||| || ||||| || |||||| || || ||| | | | Sbjct 41146 TCTTCGGAGGATCTTTGTTCTCCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCC 41205 Query 42914 GTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGA 42973 ||||||| || ||||||||| | ||| | || |||||||| || || || ||||| | Sbjct 41206 GTGAAACCACCGAAAACGAATCCACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAA 41265 Query 42974 CTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGT 43033 | || |||||||| || || || || ||||||||||| || ||||||||||| ||||||| Sbjct 41266 CCTACAACATTGTCGCCGCTCACGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGT 41325 Query 43034 TTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCT-TGGCCCGTTGTGGGGATTTGG 43092 | || || || || | |||||| ||||| | || ||||| || |||| || ||| Sbjct 41326 TCAACAACTCGCGTGCTCTTCACTTC-TTCTTAGCTCTCTGGCCTGTATTGGGTATCTGG 41384 Query 43093 TTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAA 43152 | ||| | | || ||| || ||||| || ||| | || || || ||||| ||||| Sbjct 41385 TGCACCGCCATGGGTGTCTCCACCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAG 41444 Query 43153 TCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCC 43212 | | | || || | ||||||| || ||||| || || | || |||||| Sbjct 41445 GCTGTCATCGACTCCGAGGGACGTGTCATCAACACCTGGGCCGACATAATCAACCGTGCC 41504 Query 43213 AACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGCA 43272 | ||||| | ||||| |||||||| || ||||| |||||||| || |||||| | || Sbjct 41505 GATCTTGGAATGGAGGTCATGCACGAACGTAATGCTCATAACTTTCCTCTTGATTTGGCT 41564 Query 43273 TCCGTGGAGGTTACTCCC 43290 || | ||| || ||||| Sbjct 41565 TCTGGCGAGATT-CTCCC 41581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143530926807252