Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq217 365 1e-96 >seq217 Length=78499 Score = 365 bits (404), Expect = 1e-96 Identities = 669/978 (68%), Gaps = 2/978 (0%) Strand=Plus/Minus Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933 || || || ||||| |||||||||||||||||||| |||||||| || || | || || Sbjct 41566 GAAGCCAAATCAAGAGGAAAGTTATGAGCATTACGTTCGTGCATGACCTCCATTCCAAGA 41507 Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACT 25993 | || ||||| | || || ||||| || || | ||| | || | || Sbjct 41506 TCGGCACGGTTGATTATGTCGGCCCAGGTGTTGATGACACGTCCCTCGGAGTCGATGACA 41447 Query 25994 GACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTC 26053 | |||||| ||||| || || || ||||| || ||||| ||| ||| |||||| | || Sbjct 41446 GCCTGGTTGAAGTTGAATCCGTTGAGGTTGAAGGCCATGGTGGAGACACCCATGGCGGTG 41387 Query 26054 AGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTA 26113 ||| || || | || ||||| ||| | ||||| ||||||| ||| ||| || Sbjct 41386 CACCAGATACCCAATACAGGCCAGAGAGCTAAGAAGAAGTGAAGAGCACGCGAGTTGTTG 41327 Query 26114 AAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATAT 26173 || ||| || || || || | | |||||||||||||| || |||||||| || || Sbjct 41326 AACGACGCGTATTGGAAGATGAGACGTCCAAAGTACCCGTGAGCGGCGACAATGTTGTAG 41267 Query 26174 GTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCT 26233 || || || || || |||||||| || || | ||| || | | || || ||||| Sbjct 41266 GTTTCCTCTTCCTGGCCAAACTTGTATCCGTTATTGGTGGATTCGTTTTCGGTGGTTTCA 41207 Query 26234 GCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAA 26293 || | ||||||||||| | | |||||||| || | ||| | || ||| ||||| Sbjct 41206 CGGATCAAAGAGGAAGTAACAAGAGACCCGTGCATGGCGGAGAACAAAGATCCTCCGAAG 41147 Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAAT 26353 || || ||||| || |||||||| | |||||||| || || || || || || ||||| Sbjct 41146 ACACCTGCAACTCCGGCCATATGAAGCGGGTGCATAAGGATGTTGTGCTCGGCCTGGAAG 41087 Query 26354 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCT 26413 || ||||| ||||| || || || ||||||||||||||| ||||| ||||| ||| Sbjct 41086 ACCAACATGAAGTTGAAGGTTCCGCTGATACCAAGAGGCATGCCATCTGAGAAACTTCCT 41027 Query 26414 TGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCA 26473 || || | || || | ||| || ||| || || | | ||||| | ||||| Sbjct 41026 TGCCCAATGGGGTAGGTGAGGAAGACAGCGGTGGCGGCTGCAACAGGTGCGGAGAATGCA 40967 Query 26474 ACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT 26533 ||||| ||||| || | |||||| || | || || |||||||||| | || || Sbjct 40966 ACAAAAATCCAAGGACGCATTCCGAGGCGATACGAAAGTTCCCACTCACGGCCCATGTAC 40907 Query 26534 GCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGC 26593 | || ||||| | | |||||| | | || | ||| || ||||| || ||||| | | Sbjct 40906 GAAGCAACTCCGAGAAGGAAGTGCATCACAACCAATTGGTAGGGTCCTCCGTTGTACAAC 40847 Query 26594 CACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAG 26653 || ||||||| | | |||||||||| | ||||| || || | ||||||||||| | Sbjct 40846 CATTCGTCCATGGAGGCAGCTTCCCAAACGGGGTAGAAGTGCATCCCGATTGCGTTGKAA 40787 Query 26654 GAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGC 26713 || |||| ||| | || | || || || || ||||| | | || |||| ||| || Sbjct 40786 GAAGGGATGACAGACCCGGTGATGATGTTATTACCGTAAAGAAGAGATCCGGCAACAGGT 40727 Query 26714 TCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTA 26773 || || || || || || || ||||| ||||| || || || ||| || || |||| Sbjct 40726 TCGCGGATTCCGTCAATGTCCACAGGAGGTGCGGCAATAAATGCAGTAATGAAGCATGAT 40667 Query 26774 GTGGCTGCGAGTA-AGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTT 26832 | || || || | || ||| | ||| | |||||||| || | || || ||||| Sbjct 40666 GCTGCGGCAAGAAGAGTTGGG-AACATGATAGTACCGAACCAACCGATGTAAAGGCGGTT 40608 Query 26833 CTCAGTACTTGTAACCCA 26850 || || ||||| | ||| Sbjct 40607 GTCGGTGCTTGTGATCCA 40590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147710072266080