Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq217 609 3e-169 >seq217 Length=78499 Score = 609 bits (674), Expect = 3e-169 Identities = 713/964 (74%), Gaps = 0/964 (0%) Strand=Plus/Plus Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052 ||||||||| | || |||||||||||||| | | ||| |||| || || || || Sbjct 40605 GACAACCGCCTTTACATCGGTTGGTTCGGTACTATCATGTTCCCAACTCTTCTTGCCGCA 40664 Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112 || ||||||||||| || || ||||| ||||||||||| |||||||| || || || Sbjct 40665 GCATCATGCTTCATTACTGCATTTATTGCCGCACCTCCTGTGGACATTGACGGAATCCGC 40724 Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCT 155172 ||||| || || || ||| | | || ||||| ||||||||| | || |||| ||||| Sbjct 40725 GAACCTGTTGCCGGATCTCTTCTTTACGGTAATAACATCATCACCGGGTCTGTCATCCCT 40784 Query 155173 AGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAG 155232 || |||||||| || | |||||||| || |||||||||| || | | || || Sbjct 40785 TCTTMCAACGCAATCGGGATGCACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAA 40844 Query 155233 TGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACA 155292 ||||||||||| || || || | |||| | || || | ||||||||| ||||| | | Sbjct 40845 TGGTTGTACAACGGAGGACCCTACCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCT 40904 Query 155293 GCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGT 155352 | ||| || ||| ||||||||||||| || || || || |||||||||||||| | | Sbjct 40905 TCGTACATGGGCCGTGAGTGGGAACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTT 40964 Query 155353 GTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGT 155412 ||||||| ||| ||||| || | || || |||||| ||||| || || | || Sbjct 40965 GTTGCATTCTCCGCACCTGTTGCAGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGG 41024 Query 155413 CAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTC 155472 ||||| |||||| |||| ||||||||||||||| || || || |||| ||||| Sbjct 41025 CAAGGAAGTTTCTCAGATGGCATGCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTG 41084 Query 155473 GTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGT 155532 || ||||| || || ||||| |||||||||||||| | || ||| ||||| |||||| Sbjct 41085 GTCTTCCAGGCCGAGCACAACATCCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGT 41144 Query 155533 GTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATC 155592 || ||||| |||||| | ||||| || |||||||| || | || || || || | ||| Sbjct 41145 GTCTTCGGAGGATCTTTGTTCTCCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATC 41204 Query 155593 CGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAA 155652 |||||||| || || | || || || | || |||||||| || || ||||| ||| Sbjct 41205 CGTGAAACCACCGAAAACGAATCCACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAA 41264 Query 155653 ACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCC 155712 || || |||||||| || ||||| || ||||| || ||||| |||||||| || || || Sbjct 41265 ACCTACAACATTGTCGCCGCTCACGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCG 41324 Query 155713 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGG 155772 ||||||||||| | ||||||||||||| | ||| |||||||| | | |||||| Sbjct 41325 TTCAACAACTCGCGTGCTCTTCACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGG 41384 Query 155773 GCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 155832 || || |||||||| || || ||||| |||||||| ||||| ||||||||||||||| Sbjct 41385 TGCACCGCCATGGGTGTCTCCACCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAG 41444 Query 155833 TCTGTAGTAGACGCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCT 155892 |||| | ||| | || |||||| || ||||| ||||| | ||||| || Sbjct 41445 GCTGTCATCGACTCCGAGGGACGTGTCATCAACACCTGGGCCGACATAATCAACCGTGCC 41504 Query 155893 GGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCT 155952 | |||||| ||||| || |||||||| ||||| ||||| ||||| |||||||| | ||| Sbjct 41505 GATCTTGGAATGGAGGTCATGCACGAACGTAATGCTCATAACTTTCCTCTTGATTTGGCT 41564 Query 155953 GCTG 155956 ||| Sbjct 41565 TCTG 41568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584827165826440