Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq217 482 7e-132 >seq217 Length=78499 Score = 482 bits (534), Expect = 7e-132 Identities = 709/999 (71%), Gaps = 4/999 (0%) Strand=Plus/Minus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||||||| || || ||||||||||| ||||| ||||| |||||||| || ||||| || | Sbjct 41568 CAGAAGCCAAATCAAGAGGAAAGTTATGAGCATTACGTTCGTGCATGACCTCCATTCCAA 41509 Query 40588 GACTCTGT-CTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACT 40646 || || | | ||| | | || ||||| || ||||| || | | ||| | Sbjct 41508 GA-TCGGCACGGTTGATTATGTCGGCCCAGGTGTTGATGACACGTCCCTCGGAGTCGATG 41450 Query 40647 ACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAG 40706 || | |||||| ||||| || || |||||||| || ||||| || || | |||||||| | Sbjct 41449 ACAGCCTGGTTGAAGTTGAATCCGTTGAGGTTGAAGGCCATGGTGGAGACACCCATGGCG 41390 Query 40707 GTAAGCCATATGCCAATAACCGGGAA-AGCACCAAGAAAGAAGTGTAGCGCACGGCTATT 40765 || ||| || || | || || | || | ||||| |||||| || ||||| || Sbjct 41389 GTGCACCAGATACCCAATACAGGCCAGAGAGCTAAGAA-GAAGTGAAGAGCACGCGAGTT 41331 Query 40766 GTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTT 40825 |||||| || || ||||| || || || | |||||||| ||||| || || || ||||| Sbjct 41330 GTTGAACGACGCGTATTGGAAGATGAGACGTCCAAAGTACCCGTGAGCGGCGACAATGTT 41271 Query 40826 ATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGT 40885 || || || ||||||| |||||||| || |||| || ||||| |||| ||||| Sbjct 41270 GTAGGTTTCCTCTTCCTGGCCAAACTTGTATCCGTTATTGGTGGATTCGTTTTCGGTGGT 41211 Query 40886 CTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACC 40945 || || || | |||||||||||||| |||||||| || | ||||||| || || Sbjct 41210 TTCACGGATCAAAGAGGAAGTAACAAGAGACCCGTGCATGGCGGAGAACAAAGATCCTCC 41151 Query 40946 AAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTG 41005 ||||| |||||||| ||| |||||| | |||||||| || |||||||| || || || Sbjct 41150 GAAGACACCTGCAACTCCGGCCATATGAAGCGGGTGCATAAGGATGTTGTGCTCGGCCTG 41091 Query 41006 GAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGA 41065 |||||| |||||||||||||| ||||| ||||| || | |||||| ||||| |||||| Sbjct 41090 GAAGACCAACATGAAGTTGAAGGTTCCGCTGATACCAAGAGGCATGCCATCTGAGAAACT 41031 Query 41066 ACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTA 41125 || || || | || || | ||| ||||| || |||| | || || | | | Sbjct 41030 TCCTTGCCCAATGGGGTAGGTGAGGAAGACAGCGGTGGCGGCTGCAACAGGTGCGGAGAA 40971 Query 41126 TGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGC 41185 ||| ||||| ||||| || | ||| || || | || ||||||||||||| | || Sbjct 40970 TGCAACAAAAATCCAAGGACGCATTCCGAGGCGATACGAAAGTTCCCACTCACGGCCCAT 40911 Query 41186 GTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTA 41245 ||| | || ||||| | | ||||| | |||| | ||| || ||||| |||||||| Sbjct 40910 GTACGAAGCAACTCCGAGAAGGAAGTGCATCACAACCAATTGGTAGGGTCCTCCGTTGTA 40851 Query 41246 TAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTT 41305 | ||| ||||||| | | | |||||||| | |||||||| || | ||||||||||| Sbjct 40850 CAACCATTCGTCCATGGAGGCAGCTTCCCAAACGGGGTAGAAGTGCATCCCGATTGCGTT 40791 Query 41306 AGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAAC 41365 | || | ||||| || | || || || || ||||| | | || |||| ||| Sbjct 40790 GKAAGAAGGGATGACAGACCCGGTGATGATGTTATTACCGTAAAGAAGAGATCCGGCAAC 40731 Query 41366 GGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAACA 41425 || || || || || || || || ||||| ||||| || ||||| || | ||||| || Sbjct 40730 AGGTTCGCGGATTCCGTCAATGTCCACAGGAGGTGCGGCAATAAATGCAGTAATGAAGCA 40671 Query 41426 TGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCG 41485 || | || | || | | ||| | ||| | ||| |||||||| | ||| ||||| Sbjct 40670 TGATGCTGCGGCAAGAAGAGTTGGGAACATGATAGTACCGAACCAACCGATGTAAAGGCG 40611 Query 41486 GTTGTCGGTGCTAGTGACCCAGTTACAAAACTTCTCCCA 41524 |||||||||||| |||| |||||| | || || ||||| Sbjct 40610 GTTGTCGGTGCTTGTGATCCAGTTGGAGAATTTTTCCCA 40572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143700524593866