Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq217 581 4e-161 >seq217 Length=78499 Score = 581 bits (644), Expect = 4e-161 Identities = 721/985 (73%), Gaps = 2/985 (0%) Strand=Plus/Minus Query 67337 TGCAACAGGCACAGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTC 67396 ||| ||||| | | ||| ||| ||| | |||||||| ||||| ||||| ||||| || Sbjct 41588 TGCGACAGGGAGAATCTCGCCAGAAGCCAAATCAAGAGGAAAGTTATGAGCATTACGTTC 41529 Query 67397 GTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCAC 67456 |||||| || ||||||||||| | || | ||| | ||||| ||||| || || || Sbjct 41528 GTGCATGACCTCCATTCCAAGATCGGCACGGTTGATTATGTCGGCCCAGGTGTTGATGAC 41469 Query 67457 TTTACCACCTGCGTCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCAT 67516 || | | ||| | ||| | |||||||||||||| |||||||||||||| ||||| Sbjct 41468 ACGTCCCTCGGAGTCGATGACAGCCTGGTTGAAGTTGAATCCGTTGAGGTTGAAGGCCAT 41409 Query 67517 AGTTGACACACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAA 67576 || || |||||||| || ||| ||||||| | | ||||| | ||| | |||||| Sbjct 41408 GGTGGAGACACCCATGGCGGTGCACCAGATACCCAATACAGGCCAGAGAGCTAAGAAGAA 41349 Query 67577 GTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCC 67636 ||||||| | ||||||||||| || || || |||||||| | || || ||||| || Sbjct 41348 GTGAAGAGCACGCGAGTTGTTGAACGACGCGTATTGGAAGATGAGACGTCCAAAGTACCC 41289 Query 67637 ATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTG 67696 ||||| || ||||||||||| || || ||||| || || |||||||| |||| || Sbjct 41288 GTGAGCGGCGACAATGTTGTAGGTTTCCTCTTCCTGGCCAAACTTGTATCCGTTATTGGT 41229 Query 67697 TGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGC 67756 || || | || || ||||| | ||| | ||| |||||||||||||| |||||||| || Sbjct 41228 GGATTCGTTTTCGGTGGTTTCACGGATCAAAGAGGAAGTAACAAGAGACCCGTGCATGGC 41169 Query 67757 ACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAG 67816 || | || || ||||| |||||||| ||||| |||||| | ||||||||||| Sbjct 41168 GGAGAACAAAGATCCTCCGAAGACACCTGCAACTCCGGCCATATGAAGCGGGTGCATAAG 41109 Query 67817 GATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGG 67876 |||||||||||| || ||||| || |||||| |||| || || || ||||||||||| Sbjct 41108 GATGTTGTGCTCGGCCTGGAAGACCAACATGAAGTTGAAGGTTCCGCTGATACCAAGAGG 41049 Query 67877 CATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGC 67936 ||| | || |||||| ||||| || | || ||| | ||| |||||| || || Sbjct 41048 CATGCCATCTGAGAAACTTCCTTGCCCAATGGGGTAGGTGAGGAAGACAGCGGTGGCGGC 40989 Query 67937 AGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAG 67996 | || || || ||| |||| ||| | |||||||||||||| || || || || ||||| Sbjct 40988 TGCAACAGGTGCGGAGAATGCAACAAAAATCCAAGGACGCATTCCGAGGCGATACGAAAG 40929 Query 67997 TTCCCACTGACGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTG 68056 |||||||| ||| || ||| | | | ||||| ||||||||| | || || | ||| Sbjct 40928 TTCCCACTCACGGCCCATGTACGAAGCAACTCCGAGAAGGAAGTGCATCACAACCAATTG 40869 Query 68057 GAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAA 68116 | | ||||| || || |||||||| || || | | || |||||||| | || ||||| Sbjct 40868 GTAGGGTCCTCCGTTGTACAACCATTCGTCCATGGAGGCAGCTTCCCAAACGGGGTAGAA 40809 Query 68117 GTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTA 68176 ||| | ||||||||||| || ||| | |||| || | |||||||| |||||||| Sbjct 40808 GTGCATCCCGATTGCGTTGKAAGAAGGGATGACAGACCCGGTGATGATGTTATTACCGTA 40749 Query 68177 CATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAAT 68236 | || || || ||||||||||| | ||| || || || || || |||||||| ||||| Sbjct 40748 AAGAAGAGATCCGGCAACAGGTTCGCGGATTCCGTCAATGTCCACAGGAGGTGCGGCAAT 40689 Query 68237 GAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCA-AGCAAGGAATCATCAACACACCGA 68295 |||||| | |||||||| | |||||| || || | || |||| ||| | ||||| Sbjct 40688 AAATGCAGTAATGAAGCATGATGCTGCGGCAAGAAGAGTTGGGAA-CATGATAGTACCGA 40630 Query 68296 ACCAACCAACATAGATGCGATTGTC 68320 ||||||| | || | ||| ||||| Sbjct 40629 ACCAACCGATGTAAAGGCGGTTGTC 40605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566939411562840