Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq217 605 3e-168 >seq217 Length=78499 Score = 605 bits (670), Expect = 3e-168 Identities = 767/1045 (73%), Gaps = 9/1045 (1%) Strand=Plus/Minus Query 67794 TCAACCGATAGCGGGTGCCGTCAGTGCCACGGGTGTGGA-CTCAGCAGCAGCAAGGTCGA 67852 ||||| ||| || || ||| || ||| || || | | | ||| ||| ||| | || | Sbjct 41611 TCAAC-GATGGCTGGGGCCTCCATTGCGACAGG-GAGAATCTCGCCAGAAGCCAAATCAA 41554 Query 67853 GAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACCAGCGCGGTTGA 67912 |||| ||||| || || ||||| || ||||| || ||||| || | | | || ||||||| Sbjct 41553 GAGGAAAGTTATGAGCATTACGTTCGTGCATGACCTCCATTCCAAGATCGGCACGGTTGA 41494 Query 67913 GAACGTCTGCCCAGGTAGGCAGAAC-CTTACCA-GAACTATCAAGGATAGACTGGTTGAA 67970 | ||| |||||||| | || | | || | | | | | || || ||||||||| Sbjct 41493 TTATGTCGGCCCAGGTGTTGATGACACGTCCCTCGGAGT--CGATGACAGCCTGGTTGAA 41436 Query 67971 GTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGATACC 68030 |||||| || || |||||||| ||||||||| ||||| | || ||| |||||||||| Sbjct 41435 GTTGAATCCGTTGAGGTTGAAGGCCATGGTGGAGACACCCATGGCGGTGCACCAGATACC 41376 Query 68031 AACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATA 68090 | |||||||| ||| | ||||||||| || | ||| |||||||||||||| || || Sbjct 41375 CAATACAGGCCAGAGAGCTAAGAAGAAGTGAAGAGCACGCGAGTTGTTGAACGACGCGTA 41316 Query 68091 CTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTC 68150 |||||||| ||||| || ||||| || || || || ||||||||||| || || ||||| Sbjct 41315 TTGGAAGATGAGACGTCCAAAGTACCCGTGAGCGGCGACAATGTTGTAGGTTTCCTCTTC 41256 Query 68151 TTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGTGA 68210 || || |||||||| || | || ||| || |||| ||||||||||| | || || Sbjct 41255 CTGGCCAAACTTGTATCCGTTATTGGTGGATTCGTTTTCGGTGGTTTCACGGATCAAAGA 41196 Query 68211 AGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAAC 68270 |||||||| || || || ||||| || ||||| |||||| || || || || ||||| Sbjct 41195 GGAAGTAACAAGAGACCCGTGCATGGCGGAGAACAAAGATCCTCCGAAGACACCTGCAAC 41136 Query 68271 GCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTA 68330 ||| |||||| | |||||||| |||||||||||||| || ||||| |||| |||| | Sbjct 41135 TCCGGCCATATGAAGCGGGTGCATAAGGATGTTGTGCTCGGCCTGGAAGACCAACATGAA 41076 Query 68331 GTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGG 68390 |||||| || || || || |||||||| | || ||||| ||||| || | || Sbjct 41075 GTTGAAGGTTCCGCTGATACCAAGAGGCATGCCATCTGAGAAACTTCCTTGCCCAATGGG 41016 Query 68391 ATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCA 68450 ||| |||||||| |||| || |||||||||||||| ||| |||||||| | ||||| Sbjct 41015 GTAGGTGAGGAAGACAGCGGTGGCGGCTGCAACAGGTGCGGAGAATGCAACAAAAATCCA 40956 Query 68451 AGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAAGATACC 68510 ||||||||| || || ||||| ||||||||||| ||||| |||||||| | | | || Sbjct 40955 AGGACGCATTCCGAGGCGATACGAAAGTTCCCACTCACGGCCCATGTACGAAGCAACTCC 40896 Query 68511 AATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTCATCAAG 68570 | |||||||| | | || | |||| | || || || ||||||||||| || || | Sbjct 40895 GAGAAGGAAGTGCATCACAACCAATTGGTAGGGTCCTCCGTTGTACAACCATTCGTCCAT 40836 Query 68571 GGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAAC 68630 || || |||||||||| ||| || ||||| | || ||||| || || ||| | || Sbjct 40835 GGAGGCAGCTTCCCAAACGGGGTAGAAGTGCATCCCGATTGCGTTGKAAGAAGGGATGAC 40776 Query 68631 AGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACC 68690 || || | |||||||| ||||| || ||||| || || ||||||||||| || || || Sbjct 40775 AGACCCGGTGATGATGTTATTACCGTAAAGAAGAGATCCGGCAACAGGTTCGCGGATTCC 40716 Query 68691 ATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAAACA-GATGGTTGCTGCAA 68749 || ||||||||||| || || || || || || ||||| || |||| | || |||| Sbjct 40715 GTCAATGTCCACAGGAGGTGCGGCAATAAATGCAGTAATGAAGCATGATGCT-GCGGCAA 40657 Query 68750 GCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTGGAAG 68809 | || || |||| ||| | ||||||||||| | |||||||||||| || ||| | Sbjct 40656 GAAGAGTTGGGAACATGATAGTACCGAACCAACCGATGTAAAGGCGGTTGTCGGTGCTTG 40597 Query 68810 TCACCCATTCGCAGAATGAATCCCA 68834 | | ||| | | ||||| ||||| Sbjct 40596 TGATCCAGTTGGAGAATTTTTCCCA 40572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572046541402680