Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq386 102 1e-16 seq22 95.1 2e-14 seq3 91.5 3e-13 seq141 89.7 9e-13 >seq386 Length=39556 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| ||||| ||||| || | | ||| ||||||||||| |||||||| || Sbjct 12044 TCTTCCAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTG 11985 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || ||||| || | || ||| ||||| || | || || || || || ||| Sbjct 11984 TCCTGGATCTTGGTCTTCACGTTGTCAATGGTATCAGATGGTTCCACATCCAGTGTAATA 11925 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || ||||| || ||||| ||||||||| Sbjct 11924 GTCTTACCAGTGAGCGTCTTCACAAAGATTTGCATT 11889 >seq22 Length=300247 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 193213 ATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTA 193272 |||| ||||| ||||| || ||||| || ||||||||||| |||||||| || || || | Sbjct 203446 ATTGCTTTCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGAA 203387 Query 193273 TTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTAC 193332 | ||||| || | ||| ||| || ||||||| ||| || || | || || || || | Sbjct 203386 TCTTGGTCTTGACATTGTCAATGGTGTCGGAAGGCTCGACATCCAAGGTGATTGTCTTTC 203327 Query 193333 CTGTTAGCGTTTTTACAAATAT 193354 | || | |||||||| || || Sbjct 203326 CGGTCAATGTTTTTACGAAAAT 203305 >seq3 Length=497493 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||| ||||||||||| || | | |||||||||||||| |||||||| || Sbjct 135320 ATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCAGGAGGGATTCCTTCCTT 135261 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || ||||| || | || |||||| || || | ||| || || ||||| || Sbjct 135260 GTCCTGGATCTTGGTCTTGACGTTGTCAATAGTGTCCGATGGCTCGACATCAAGAGTGAT 135201 Query 193325 AGTTTTACCT 193334 || |||||| Sbjct 135200 GGTCTTACCT 135191 >seq141 Length=126064 Score = 89.7 bits (98), Expect = 9e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || ||||||||||| || |||| ||||| || | || || || || || || Sbjct 117154 CCTCCTCTCAATCGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACTC 117095 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | |||| | ||| || ||||| ||||||||||| || | | || ||||| || || Sbjct 117094 AGAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTGGG 117035 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 |||||||| || || || || ||||| || | || || || || || | ||| || Sbjct 117034 ATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGATGGCTCGACA 116975 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || || || || || || || || |||||||| Sbjct 116974 TCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 116928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899642040997680