Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq134 84.2 3e-11 >seq134 Length=128537 Score = 84.2 bits (92), Expect = 3e-11 Identities = 218/332 (66%), Gaps = 3/332 (1%) Strand=Plus/Plus Query 18407 TCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGT 18466 ||| | ||||| | | | | || || || || || |||||| | || |||| ||| Sbjct 121810 TCTCTATCTTTTGGGTTTGTAATGTATGTATCAATCAACAAACAGTAAGTTTCTTGATGG 121869 Query 18467 ATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCG 18526 ||||||||||| || || ||||| | ||| || ||| |||||||| | || || Sbjct 121870 ATGCTTTCCATGGCCATTTGAAATCCATAGAAGCATCGTGCCTCGGGCACTGTAACATCT 121929 Query 18527 CTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCC 18586 | | | |||||||| |||| || ||| || || || ||||| ||||| |||||| Sbjct 121930 CGACAGAATCTTTCGGCCAAGTTTTCAACGACAATCCCATCAGCCCCCGCGAAGAATGCC 121989 Query 18587 AAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATT---GTTCCATTCATCTATA 18643 | || | |||||||| || || || | | |||| || | ||| || | Sbjct 121990 AGGACCATGCTGATGAAATGCTTCTCGTTTTTCGTGAGGTTTTCTTGCCAGTCTGTCAAG 122049 Query 18644 TCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATT 18703 ||| || | ||||| ||| || | |||||||| || | | | |||||||||||| Sbjct 122050 TCTGCCGACAAATCAATTTCATCGGCCGTCCAAAAGGAAGCTACATGCTGTTTGTACATG 122109 Query 18704 TTATAAATATCTTCATGTTGTATAGGAAATAA 18735 | | | |||| |||| || ||||| || Sbjct 122110 CTCCATAGATCTGGGTGTTCGATGGGAAACAA 122141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731861945908400