Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq386 114 2e-20 >seq386 Length=39556 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| |||| ||| || ||||||||||| |||||||| || |||||||| |||||||| | Sbjct 11818 CGTCTTCCAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGGATTCCTTCCT 11759 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | || || || || | || || ||| || ||||| |||| ||| || || || || | Sbjct 11758 TGTCCTGGATCTTGGTCTTCACGTTATCAATGGTATCAGACGGTTCAACGTCCAGTGTGA 11699 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 |||| |||||||| | ||| || | || || |||||| Sbjct 11698 TGGTCTTACCAGTGAGTGTCTTCACAAAGATTTGCATT 11661 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || | ||| || | ||||| || | ||||| || || ||||| || || Sbjct 11435 ATTCCTCCACGAAGACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTC- 11377 Query 171900 GATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | | | | || ||| || |||||||| || ||||||||||| |||||||| || || || Sbjct 11376 GCTTAGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGG 11317 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || |||||||| || || || || || | || ||||| || || || || | || Sbjct 11316 AGGAATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTC 11257 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || | || || || || || || || ||||| | ||| ||||| Sbjct 11256 GACATCCAACGTGATTGTCTTGCCGGTCAAAGTTTTTACGAAAATCTG 11209 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||||||| || ||||||||||| |||||||| || |||||||| |||||||| || Sbjct 11588 TCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGGATTCCTTCCTTG 11529 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || | || ||||| ||||| || || | || || || | || || Sbjct 11528 TCCTGAATCTTGGTCTTGACATTGTCAATAGTGTCCGAAGGCTCGACATCCAACGTGATA 11469 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || | || || | || || |||||| Sbjct 11468 GTCTTTCCCGTGAGGGTCTTGACAAAGATTTGCATT 11433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905123565694200