Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq240 127 6e-24 seq137 127 6e-24 seq281 102 2e-16 seq108 100 8e-16 seq276 93.3 1e-13 seq28 89.7 2e-12 >seq240 Length=79559 Score = 127 bits (140), Expect = 6e-24 Identities = 207/294 (70%), Gaps = 8/294 (3%) Strand=Plus/Minus Query 302554 TCATAACCAATCATAA-TGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||| | | ||||| ||| |||||| |||| ||||| ||||| |||||||| || Sbjct 16631 TCATACCGAGCCATAACTGT-TTCCATCGCTTTGACCAAACGGCGCTGGATATAACCGGT 16573 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | ||| || ||| ||||| || | ||| | ||||||||||||||||| || || Sbjct 16572 CTCTGCTGTCTTACAAGCGGTATCGATCAAACCTTCTCGACCACCCATAGCATGAAAAAA 16513 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | || | || | ||| | | | | | || || || ||||| | |||||| Sbjct 16512 AAATTCCTGAGGAGTCAACCCACGCAGGTAACTGTTTTCGACAAATCCACGAGACTCGGG 16453 Query 302733 ---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGAT 302789 | ||||||| ||| | ||| || || || || | |||| | | ||||||||||| Sbjct 16452 TCCCAAATCGTC---CTTTGAAAAATGGGGAAGCGTTCGTTTCTTAAATCCGTATGGGAT 16396 Query 302790 ACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||||||||| || || ||||||||||||| |||| ||| ||||| |||||||| Sbjct 16395 ACGCTTTCCTTCCACATTCTGCTGTCCCACACACGCAATGATCTGAGAAATATT 16342 >seq137 Length=130264 Score = 127 bits (140), Expect = 6e-24 Identities = 333/495 (67%), Gaps = 20/495 (4%) Strand=Plus/Minus Query 288853 TCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCC 288912 ||||| | ||| | ||| |||| ||| |||| | || || | | ||||| | ||| Sbjct 127201 TCAAATCGACCGGGACGCGTTAGGGCTTGGTCCAGAATGTCCACGCGATTTGTGCCGGCC 127142 Query 288913 AATACAACAATAGATTCGGTTTGCTTA-AATCCATCCATACTTGTTAAAATTTGATTAAG 288971 || ||||||| | | |||| | ||||||||||| | || |||||||| || Sbjct 127141 AAGACAACAACACCA-CTTTTTGTATCGAATCCATCCATCTCTACTAGCATTTGATTTAG 127083 Query 288972 TGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTC-CtttttttAC 289030 || | ||| | |||||| ||| |||| | | |||| ||| | | || || Sbjct 127082 AGTGTTTTCACGTTCATCGTTT---CCTCC---AAC-CCCGCCACGCCCACGTTGGCGAC 127030 Query 289031 CAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC--AATTGC 289088 |||||||||| || || || ||||| || | ||||| ||||| | ||| || ||| Sbjct 127029 CAACAGCATCTATCTCATCGATGAAGATAATGCACGGTGAATTCTCTCTTGCCTCCTTG- 126971 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||||| || | || || |||| ||||| ||| ||| ||||||| | || |||||| | Sbjct 126970 -AATAAGTCGCGAACTCGTGATGGTCCAACACCCACAAACATTTCAATGAAATCAGAA-C 126913 Query 289149 GGATACTTG-AATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 | || | | || ||| | || |||||||| || || ||| | || ||||| |||| Sbjct 126912 CGCTAATAGAAAAGAAAGGGACTCCCGCTTCGCCAGCCACAGCCTTGGCAAGAAGGGTCT 126853 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 | || |||||||| || || | ||| |||||||||| | ||| |||||| || | Sbjct 126852 TTCCAGTTCCAGGAGGACCACAAAGAAGAGCTCCCTTTGGAATTTTCGCCCCA--AGCTT 126795 Query 289268 --TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || ||| || || | ||| || || |||| |||| ||| ||| | ||||| || Sbjct 126794 TGTAAATTGTTCTGGTGATTGTAAGAAATCAACAAATTCCACAATTTCCTTCTTTGCTTC 126735 Query 289326 ATCACATCCTGCTAC 289340 || || || || || Sbjct 126734 TTCGCAACCCGCAAC 126720 >seq281 Length=72477 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 252557 CATACATACCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACTGAT 252616 |||| || || | || ||||| ||||||||||||||||| || || | |||||||| | Sbjct 10066 CATAGATTCCCATGGCTTGCTTACCCATAGCACTCTGGTAGGTGTTACGAGGAGACTGGT 10007 Query 252617 TGTTTTCCGGGAAAGGAATGCATGATGCTACAACACCGAAGATAGTGCTTGGGTGAATTT 252676 ||| |||||||| |||||| || || |||||| || || || ||||||||||| Sbjct 10006 TGTGATCCGGGAAGGGAATGATAGAGGCACAAACACCCAAAATCATGGATGGGTGAATTT 9947 Query 252677 CACAGTGACTGTAA 252690 |||||||| | ||| Sbjct 9946 CACAGTGAGTATAA 9933 >seq108 Length=147947 Score = 100 bits (110), Expect = 8e-16 Identities = 479/750 (64%), Gaps = 17/750 (2%) Strand=Plus/Minus Query 155595 GCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACAGCACAG 155653 || || || || || ||||| |||| || | | |||| | |||||||| || || Sbjct 13281 GCAAGGTTGCAAACGGCAGTTTCCTCTGGAGAAG-TGTACTGAACAATCTCGGTACATAG 13223 Query 155654 GTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTT 155713 ||| |||| ||||| || || || | || || || || |||| || |||||| Sbjct 13222 GTTCGAACAACGAATGGTTCCCAAGTTTTGTTGATTCGACTTGTTGTTGCAGTGATCCTT 13163 Query 155714 GTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTC 155773 ||| | ||||| ||||||||||| || | ||| | ||||| || | |||||| | Sbjct 13162 GTACACCATGTAAGGGGTTCCTGTTTCGACCTGCGAGTCCAAGATTGCGAACCAGAGCTG 13103 Query 155774 ACGGGCATTAATTTGCTTGTTGTATCT-GCCTTCCGACTCATA--TTTCATATACAGCGT 155830 | || | |||| | ||| | || |||||| ||| || |||| || | | | Sbjct 13102 CTGCGCCTGAATT-GTTTGGCGACCCTTGCCTTCTTTCTCGTACTTTTCGTACAATTCCT 13044 Query 155831 TCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGA 155890 | | | || | |||| ||||| || || ||||||| ||||| || | || || Sbjct 13043 T--GAACTCYTGTCCGTGGCAATCGGGGAGACCGGGGCACTCGTCGGGACACATCAACGT 12986 Query 155891 CCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAA 155950 ||| | || | | ||||| ||||| || | ||| ||| | || || || Sbjct 12985 CCATGTCCCGTTGGCCTTGACACGTTCCATGAACAGGTCAGGGATCCAGAGAGAGTAAAA 12926 Query 155951 AAGGTCCCTTGCCT--TTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCC 156008 | || | ||| | | || || | ||||| || || || || ||||| || | Sbjct 12925 CAAATCACGTGCGCGATCGGCT--TCGTTCCCGTGGTTTTTGCGAAGATCTAAAAAGGCA 12868 Query 156009 TCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC---A 156065 ||||| | || ||||||| || || |||| || || || | |||||| | Sbjct 12867 AAGATATCTGCGTGCCAGGGCTCCAAGTAAATGGCAATGCTTCCCTTGCGCTTGCCTCCA 12808 Query 156066 CCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTG 156125 |||||||| || || | || || || |||||||||| | ||| || | || |||||| Sbjct 12807 CCCTGATCGACGTATCKGGCGGTGTTGTTGAAGACACGCAACATGGGGACGATGCCATTG 12748 Query 156126 GAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGT 156185 || || || |||||||| ||||| | || | | |||| || || | || Sbjct 12747 GATGTACCGTTGGTTCCACGAATGTAGGATTTACTGGCACGAATGTTGTGGGTTGCCAGA 12688 Query 156186 CCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCT 156245 ||||| ||||||| | || ||||| ||||| ||| | || | | | || || Sbjct 12687 CCAATTCCACCTGCGTACTTCGAAATCACGGCGCAGCTCTTGAGTGTGTCGTAGATGCCA 12628 Query 156246 TCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGA-GGTCGTGGTGT 156304 || || || || || | ||||| | ||| | || || | ||| ||| || | || Sbjct 12627 TCGATGGAGTCTTCCTTCATTGTCAACAGAAAACAAGAGGACATCTGAGGGTTGTTG-GT 12569 Query 156305 TCCAGCGTTGAATAGTGTAGGTGTTGCATG 156334 ||| |||||||| || || ||||| ||||| Sbjct 12568 TCCGGCGTTGAAGAGGGTCGGTGTGGCATG 12539 >seq276 Length=67288 Score = 93.3 bits (102), Expect = 1e-13 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||| ||||||||||| ||||||||||| || | ||| ||||| |||| | || | Sbjct 19870 ACCTACAGCATCAATCTCGTCAATGAATATTATACATGGAGACTTTTTCTTGGCGGCCTC 19811 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || | ||| | ||||| ||||||||| || ||||| | ||| |||||| | | | Sbjct 19810 GAAAAGTTCCCGGACACGTTTTGCTCCAAGTCCTACATATACCTCTTCAAATTGACTA-C 19752 Query 289149 GGATACT-TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 | | || || ||| | ||| ||||| || || | |||| |||| || || |||| Sbjct 19751 CGCTGCTGAAAAAGAAAGGCACACCGGCTTCACCAGCAATTGCCTTCGCAAGGAGGGTCT 19692 Query 289208 TACCTGTTCCAGGTGGTCCC 289227 |||| ||||| ||||||||| Sbjct 19691 TACCAGTTCCGGGTGGTCCC 19672 >seq28 Length=254195 Score = 89.7 bits (98), Expect = 2e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 354031 GAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCAC 354090 || ||||| || ||| | || || |||||||||||||| | || ||| |||| ||||||| Sbjct 117656 GATTCACGATCAAGGTAGTTTGTGGGTTCGTCAAGGATGACAATGTGGGGCTGCATCCAC 117597 Query 354091 ATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAGTGC 354137 || ||||| || | || ||||| ||||||||||| || || || || Sbjct 117596 ATGGCTGCTGCGATGACAACCTTCACCTTCTGTCCTCCAGAGAGGGC 117550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471796875428363