Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq110 235 7e-56 seq31 141 1e-27 seq837 120 4e-21 seq41 120 4e-21 seq108 114 2e-19 seq33 111 2e-18 seq23 91.5 2e-12 >seq110 Length=137954 Score = 235 bits (260), Expect = 7e-56 Identities = 243/312 (78%), Gaps = 6/312 (2%) Strand=Plus/Minus Query 868693 CTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAA 868752 ||||||||| || || |||||| |||||||||||||||||| |||| |||||||||| Sbjct 11764 CTTGGCGTATTCCCCGACGCGCTTCTCGAAAAAGTTGGTCTTTCCCTGCAGCGAGATCAT 11705 Query 868753 CTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCG-CATCC-GAGCGACGCG 868810 |||||||||| || |||||||| |||| |||||||||| | || || | ||||| Sbjct 11704 CTCCATCCACTCAAAGGGGTTGGGGGTCTGGTAGTGCTTTGGGGCACCCAGGGCGACC-- 11647 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||||||||||||| |||||||||||||| |||||| | ||||||||||||| Sbjct 11646 AGCAGGCGGTCGGCGCAGAACTCGATGTACTGCTGCATGAGCTTCGAGTTCATGCCGATG 11587 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| | ||||| || | ||||| || || || || ||||| |||||||| | | || Sbjct 11586 AGCTCTACCGGGAGGGCGTCGCTGACGAATTCCTTTTCGATGTCGACGGCGTTGGTGACA 11527 Query 868931 ATCTGC-CTGGGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGC 868989 |||| | | || | |||| | | |||||||||| ||| | ||||||||| |||||| Sbjct 11526 ATCTCCACGATGCGC-TCGGGGGCGAGCTTGTTGACCAGCTTGTTGTAGAGCATGCAGGC 11468 Query 868990 AAAGTCGCAGTG 869001 |||||||||||| Sbjct 11467 AAAGTCGCAGTG 11456 Score = 224 bits (248), Expect = 1e-52 Identities = 221/285 (78%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | |||||| |||||| |||||||||||||||||||||||| Sbjct 11451 CCCTCGTCGCGCGAGATGAGCTCGTTGGAAAAGGCCAGGCCGGGCATGAGGCCGCGCTTC 11392 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 ||||||||||||||||||||||| || |||||||||||||| ||||| ||| || |||| Sbjct 11391 TTGAGCCAAAAGATGGCGCAGAAGCTCCCCGAGAAAAAGATTCCCTCCACGACGCAAAAG 11332 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||| | |||||| |||||| || | | | || || | ||||| | |||||| Sbjct 11331 GCGACGCACCGCTCCGCAAAGCTGGCCATTC---CCGAGTCGCACCACTGGAGGGCCCAG 11275 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 ||||||||||| ||| | || ||||||||||||||| | | ||| || ||| || Sbjct 11274 CGGGCCTTTTTCCGCACGCAGGGGACCGTGTCGATGGCGTGGAGGAGACGGAGCTTCTCC 11215 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 | | ||||||| || |||||||| |||||||| ||||||||| Sbjct 11214 TCGGAATCCTTGATGTACGTGTCGATGAGGAGCGAGTAGGTCTCC 11170 Score = 149 bits (164), Expect = 8e-30 Identities = 183/250 (73%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| | ||||||||||||||||| ||| | |||| | | | Sbjct 11171 CCGAGTGGATGTTCTCCACCGCGATCTGGAAGCCGTAGAAGCAGCGTCCCTCGGGCGACT 11112 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 ||| ||| |||| || |||||||| ||| ||||| ||||| || || | Sbjct 11111 GGAGCTCGGTCATAAAGTTCTGTGCCAGGTTTTCGTTGACGATCCCGTCCGATGCCGCAA 11052 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || ||||||| ||| |||| ||||| ||||||| |||| ||| ||||| | | Sbjct 11051 AGAAGGCCAGGATGTGGCTGATGAAGTGTCGCTCGTTGTCGGACAGCTTGACCCAATCGG 10992 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | |||| | || ||| || | ||| || |||||||||| ||||||||||||||||||| Sbjct 10991 CCATGTCCGAGCCGAGATCGATCTCTTCCGCGGTCCAGAAGGAGGCCTCGGCCTTTTTGT 10932 Query 869871 ACATCTCCCA 869880 |||| ||||| Sbjct 10931 ACATTTCCCA 10922 >seq31 Length=250787 Score = 141 bits (156), Expect = 1e-27 Identities = 196/268 (73%), Gaps = 11/268 (4%) Strand=Plus/Plus Query 1349421 GCTGCGGTCGGCGGCCAAGGGCGTCGCCTACCTGCACGGTCTCGACCCGCCCATCGTGCA 1349480 ||||||| |||||| ||| | |||||||| ||| | | |||||||| | |||| Sbjct 185642 GCTGCGGC--GCGGCCCGCGGCATGGCCTACCTCCACAGCGGCCACCCGCCCGTTCTGCA 185699 Query 1349481 CCGCGACCTCAAGAGCGGCAACCTGCTGGTCGACCAAAACTACAACGTCAAGGTGGCCGA 1349540 ||||||||| ||||||| |||||| ||| ||||| | | ||||| | |||||| ||| Sbjct 185700 CCGCGACCTGAAGAGCGCCAACCTCCTGCTCGACGAGAGCTACACCACCAAGGTCTGCGA 185759 Query 1349541 CTTTGGCCTGGCGCGCATTAAGG---AGGACAACGCCACGATGACC-CG--CTGCGGCAC 1349594 ||||||||| || | |||| ||| | || || |||||| || |||||| || Sbjct 185760 CTTTGGCCTCAGCCGGCTCAAGGCCCAGGCC--CG-CAGCATGACCGCGAACTGCGGGAC 185816 Query 1349595 GCCCTGCTGGACGGCGCCCGAGGTCATACGCGGCGAGCGCTACGACGAGCGGGCCGACGT 1349654 | | |||| ||| ||||||||| | | | | |||||||||||||||||||||| Sbjct 185817 GGTCCAGTGGATGGCCCCCGAGGTCCTCGCCAACCGGAGCTACGACGAGCGGGCCGACGT 185876 Query 1349655 CTACTCATTTGGCATCATCGCGTGGGAG 1349682 |||| ||||| ||||||| |||||| Sbjct 185877 CTACAGCTTTGGGATCATCGTCTGGGAG 185904 Score = 89.7 bits (98), Expect = 6e-12 Identities = 158/225 (70%), Gaps = 18/225 (8%) Strand=Plus/Plus Query 1848305 CACCGCGACCTCAAGTCACTCAACCTGCTGCTCGACGCCAAGTGGAACGTCAAGGTCTCG 1848364 ||||||||||| ||| |||||| |||||||||| | | | | |||||||| Sbjct 185698 CACCGCGACCTGAAGAGCGCCAACCTCCTGCTCGACGAGAGCTACACCACCAAGGTCTGC 185757 Query 1848365 GACTTTGGCCTCACCCGGTTCAAGGCCGACCTGGCGCGCGGTGGCAGCGGCAGCGACGTC 1848424 ||||||||||||| |||| |||||||| | ||| ||| | || | | |||| | Sbjct 185758 GACTTTGGCCTCAGCCGGCTCAAGGCCCA---GGCCCGCAG---CAT-GACCGCGAACT- 185809 Query 1848425 GTGCAGGGCACCGTCCAGTGGCTGGCGCCCGAGGTCCTGGACGAGAGCGCCGACGTCGAC 1848484 || || || ||||||||| |||| ||||||||||| | | | ||| | | || Sbjct 185810 --GCGGG--ACGGTCCAGTGGATGGCCCCCGAGGTCCTCGCCAA-----CCGGAG-CTAC 185859 Query 1848485 TACATGCAGGCCGACGTCTACGCCTTTGGCGTCGTGCTCTGGGAG 1848529 || || ||||||||||||| |||||| || | |||||||| Sbjct 185860 GACGAGCGGGCCGACGTCTACAGCTTTGGGATCATCGTCTGGGAG 185904 >seq837 Length=3602 Score = 120 bits (132), Expect = 4e-21 Identities = 161/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | || ||||| ||||||||||||||||| |||| | || Sbjct 2319 GCTTGGCGAGCTCACCGGGAAGCATGAGGCGGACGGCGGTCTGGATCTCTCGCGAG--GA 2376 Query 1254403 TCGTGTTGCG--CTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460 | || || |||||| || || || ||||| ||| | | ||||| |||| Sbjct 2377 AAGGGTGGCCTTCTTGTTGTAGGTGGCAAGCTTTCCGGCTTCGCCGGCAATGCGCTCGAA 2436 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 || ||||||| || |||||||||| ||||| ||| |||||||| || |||||| Sbjct 2437 GATATCGTTGATGAAGGAGTTCATGATAGACATTCCCTTCTTGGAGATACCAGTGTCGGG 2496 Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||| |||||||| | |||||||||||| | | |||||||| Sbjct 2497 GTGGACCTGCTTCAATACCTTGTAGATGTAGGTGGAGTACGA 2538 >seq41 Length=226872 Score = 120 bits (132), Expect = 4e-21 Identities = 161/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | || ||||| ||||||||||||||||| |||| | || Sbjct 42098 GCTTGGCGAGCTCACCGGGAAGCATGAGGCGGACGGCGGTCTGGATCTCTCGCGAG--GA 42041 Query 1254403 TCGTGTTGCG--CTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460 | || || |||||| || || || ||||| ||| | | ||||| |||| Sbjct 42040 AAGGGTGGCCTTCTTGTTGTAGGTGGCAAGCTTTCCGGCTTCGCCGGCAATGCGCTCGAA 41981 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 || ||||||| || |||||||||| ||||| ||| |||||||| || |||||| Sbjct 41980 GATATCGTTGATGAAGGAGTTCATGATAGACATTCCCTTCTTGGAGATACCGGTGTCGGG 41921 Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||| |||||||| | |||||||||||| | | |||||||| Sbjct 41920 GTGAACCTGCTTCAAAACCTTGTAGATGTAGGTGGAGTACGA 41879 >seq108 Length=147947 Score = 114 bits (126), Expect = 2e-19 Identities = 191/274 (70%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| |||||||| | || |||| ||| ||||| || | |||||| |||| ||| ||||| Sbjct 12805 CTGATCGACGTATCKGGCGGTGTTGTTGAAGACACGCAACATGGGGACGATGCCATTGGA 12746 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || | ||||| ||| || | ||||| | || | || Sbjct 12745 TGTACCGTTGGTTCCACGAATGTAGGATTTACTGGCACGAATGTTGTGGGTTGCCAGACC 12686 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || || |||| || || | ||||| ||||| |||||||||||||| || Sbjct 12685 AATTCCACCTGCGTACTTCGAAATCACGGCGCAGCTCTTGAGTGTGTCGTAGATGCCATC 12626 Query 1630245 GATCGAGTCGGCCTTCAT-GTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303 ||| ||||| ||||||| ||| || ||||| || || || | || |||| || | Sbjct 12625 GATGGAGTCTTCCTTCATTGTCAAC-AGAAAACAAGAGGACATCTGAGGGTTGTTGGTTC 12567 Query 1630304 CGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAA 1630337 ||||||||||||| || || || || |||||| Sbjct 12566 CGGCGTTGAAGAGGGTCGGTGTGGCATGGGTGAA 12533 >seq33 Length=258575 Score = 111 bits (122), Expect = 2e-18 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 1592150 GACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAG 1592209 |||||||||||| | ||||| || | |||||||| ||||||||| | ||||||||| Sbjct 159772 GACGTCGAGCAGGTCCTGCTCTTCGAACTCATCCTCGCGGCCAACTACATGGACATCAAG 159713 Query 1592210 CCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAG 1592269 || || || || || |||| | | || ||| ||||||||||| ||| |||| ||| Sbjct 159712 CCGCTCCTGGACCTGACGTGCGCGACGGTCGCCTCGATGATCAAGGGAAAGACGCCAGAG 159653 Query 1592270 GAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 || ||||||| ||||| ||||||| | ||| Sbjct 159652 GACATCCGCAGCACCTTCAACATCACGAACG 159622 >seq23 Length=297195 Score = 91.5 bits (100), Expect = 2e-12 Identities = 102/136 (75%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 567553 CCGCCGACGCCGAGGGCTACGTGGGCGCGACGGTGCTGCAGCCGCGCGCCGGCTACTACG 567612 ||| ||||||| | ||||| |||||||||||| ||| | || | ||||||| Sbjct 228983 CCGACGACGCCAA---CTACGAGGGCGCGACGGTCCTGGACCCCATCAAGAACTACTACC 228927 Query 567613 ACGTGCCCATCGTGACGCTCGACTACCAGTCGCTCTACCCGTCGATCATGGAGGCCAACA 567672 | || || || | ||||||||| | | ||||| ||||||||||||||| ||||| ||| Sbjct 228926 AGGTTCCGATTGCGACGCTCGATTTCGCCTCGCTGTACCCGTCGATCATGCAGGCCTACA 228867 Query 567673 ACCTGTGCCCGTCGAC 567688 |||||||| ||||| Sbjct 228866 ACCTGTGCTACTCGAC 228851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107049010913383