Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq141 138 1e-27 seq456 132 4e-26 seq386 129 5e-25 seq3 116 3e-21 seq108 98.7 9e-16 seq22 96.9 3e-15 >seq141 Length=126064 Score = 138 bits (152), Expect = 1e-27 Identities = 173/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| ||||| | || || || ||||| || || || || ||||| || || ||| Sbjct 116925 ACCATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTCTCGATGTCGA-GCC 116983 Query 24761 ACCG-ACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCG 24818 | || |||| | || |||| || || || |||||| ||||| |||||||| || || | Sbjct 116984 ATCGGACACGATCGACAACGTCAAGACCAA-GATCCAGGACAAGGAAGGAATCCCACCGG 117042 Query 24819 ATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATT 24878 |||| |||||| | ||||||||||| || || |||||||| ||| || |||| Sbjct 117043 ATCAGCAACGTCTTATCTTTGCCGGAAAGCAATTGGAGGATGGTCGAACTCTGAGTGATT 117102 Query 24879 ATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 | ||||| ||||||||||| || || || ||||| |||||||| | ||||| Sbjct 117103 ACAACATCCAAAAGGAATCCACCCTGCATTTGGTCCTGCGATTGAGAGGAGG 117154 >seq456 Length=31050 Score = 132 bits (146), Expect = 4e-26 Identities = 166/225 (74%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 24707 CAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGAC 24766 ||||| ||| | || || || || || || || || || || || || ||| | ||||| Sbjct 6636 CAGATTTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGACGTGGAACCGTCCGAC 6695 Query 24767 ACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACA 24825 || | || |||| ||||| || |||||| ||||| |||||||| |||||||| || || Sbjct 6696 ACCATCGACAACGTCAAAACCAA-GATCCAGGACAAGGAAGGAATTCCTCCCGACCAGCA 6754 Query 24826 ACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACAT 24885 ||| | ||||||||||| || || |||||||| | | | || || || ||||| Sbjct 6755 GCGTCTCATCTTTGCCGGAAAGCAATTGGAGGATGGCCGCACCCTGAGCGACTACAACAT 6814 Query 24886 TCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| || || ||||||||| | || ||||| ||||| Sbjct 6815 CCAGAAGGAATCCACCCTTCACTTGGTGCTTCGCTTGCGGGGAGG 6859 >seq386 Length=39556 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || ||||| || ||||| |||||||| || || || ||| | | Sbjct 11890 ATGCAAATCTTTGTGAAGACGCTCACTGGTAAGACTATTACACTGGATGTGGAACCATCT 11949 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| || || || |||||| ||||| |||||||| ||||| ||||| Sbjct 11950 GATACCATTGACAACGTGAAGACCAA-GATCCAGGACAAGGAAGGAATTCCTCCTGATCA 12008 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | |||||||| || || || ||||| || | | | || || || || Sbjct 12009 GCAGCGTCTTATCTTTGCTGGAAAGCAACTGGAAGACGGCCGCACCTTGAGTGACTACAA 12068 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| ||||||||||| || || |||||||| | || | |||||||| Sbjct 12069 CATCCAAAAGGAATCTACCCTTCACTTGGTTCTCCGTCTTCGCGGAGG 12116 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || ||||| || || || || || || ||| | | Sbjct 11662 ATGCAAATCTTTGTGAAGACACTCACTGGTAAGACCATCACACTGGACGTTGAACCGTCT 11721 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| || || || |||||| ||||| |||||||| || || ||||| Sbjct 11722 GATACCATTGATAACGTGAAGACCAA-GATCCAGGACAAGGAAGGAATCCCACCTGATCA 11780 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||| ||||| || || || ||||| || | | | || || || || Sbjct 11781 GCAGAGATTGATTTTTGCTGGAAAGCAACTGGAAGACGGCCGCACCTTGAGTGACTACAA 11840 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| ||||||||||| || || |||||||| Sbjct 11841 CATCCAAAAGGAATCCACGCTTCACTTGGT 11870 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 24707 CAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGAC 24766 ||||| || | ||||| | ||||| || || || ||| | || || || | | ||| Sbjct 11209 CAGATTTTCGTAAAAACTTTGACCGGCAAGACAATCACGTTGGATGTCGAGCCTTCGGAC 11268 Query 24767 ACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAA 24826 || | || | || || |||||||| ||||| |||||||| ||||| ||||| || Sbjct 11269 ACCATTGACAATGTCAAGACCAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCAGCAG 11328 Query 24827 CGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATT 24886 | ||||| ||||| || || || |||| ||| || | | | || || || || Sbjct 11329 AGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGGACCCTAAGCGACTACAATATC 11388 Query 24887 CAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || ||||| ||| | || | || ||||| Sbjct 11389 CAAAAGGAATCTACTCTTCACTTAGTGCTTCGTCTTCGTGGAGG 11432 >seq3 Length=497493 Score = 116 bits (128), Expect = 3e-21 Identities = 152/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCG-ACACAGTAGA-AACGGTAAAACAAA 24788 ||||| || || || || || || || |||| || |||| | || |||| || || || Sbjct 135192 GGTAAGACCATCACTCTTGATGTCGA-GCCATCGGACACTATTGACAACGTCAAGACCAA 135250 Query 24789 AGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAAC 24848 |||||| ||||| |||||||| ||||| |||||||||||| | ||||||||||| || | Sbjct 135251 -GATCCAGGACAAGGAAGGAATCCCTCCTGATCAACAACGTCTTATCTTTGCCGGAAAGC 135309 Query 24849 AGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACT 24908 | |||| ||| | | | || ||||| ||||| ||||||||||| || || |||| Sbjct 135310 AATTGGAAGATGGACGCACCTTGAGCGATTACAACATCCAAAAGGAATCCACCCTTCACT 135369 Query 24909 TGGTGTTGCGATTGCGCGGAGGCGG 24933 |||| | || | || ||||| || Sbjct 135370 TGGTTCTTCGTCTCCGAGGAGGAGG 135394 >seq108 Length=147947 Score = 98.7 bits (108), Expect = 9e-16 Identities = 232/347 (67%), Gaps = 11/347 (3%) Strand=Plus/Minus Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361 ||||||||||||||| | ||| | ||| | |||| | || | ||| || | || Sbjct 13066 CTCGTACTTTTCGTACAATTCCTTGAACTCYTGTCCGTGGCAATCGGGGAGACCGGGGCA 13007 Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421 || ||| |||||||| | || |||| ||||| |||||||| || ||||||||| || Sbjct 13006 CTCGTCGGGACACATCAACGTCCATGTCCCGTTGGCCTTGACACGTTCCATGAACAGGTC 12947 Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATG----T 139477 || ||||| | || | | | |||||| || || | ||| || ||| || | Sbjct 12946 AGGGATCCAGAGAGAGTAAAACAAATCACGTGCGCGATCGGCTT-CGTTCCCGTGGTTTT 12888 Query 139478 TACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCA 139537 | || || | || || |||| | || |||||||| || |||| || ||||| | Sbjct 12887 TGCG-AAGATCTAAA--AAGGCAAAGATATCTGCGTGCCAGGGCTCCAAGTAAATGGCAA 12831 Query 139538 TTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGC 139594 | || || || ||| ||||| |||||||||| || | | || ||||| || | Sbjct 12830 TGCTTCCCTTGCGCTTGCCTCCACCCTGATCGACGTATCKGGCGGTGTTGTTGAAGACAC 12771 Query 139595 GCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG 139641 ||||||| || | | || | | ||| |||||||| | ||| ||| Sbjct 12770 GCAACATGGGGACGATGCCATTGGATGTACCGTTGGTTCCACGAATG 12724 >seq22 Length=300247 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| |||||||| ||||||||||| || ||| | || ||||| || || Sbjct 203493 AAGATCCAAGACAAGGAAGGAATTCCTCCCGATCAGCAGCGTCTTATATTTGCTGGAAAG 203552 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || |||||||| | | || || |||||||| || |||||||| || || || Sbjct 203553 CAATTGGAGGATGGTCGTACTTTGAGCGACTATAACATCCAGAAGGAATCCACTCTTCAT 203612 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 |||||| | || | || ||||| Sbjct 203613 TTGGTGCTTCGTCTTCGTGGAGG 203635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449891419531720