Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq110 273 3e-67 seq41 159 5e-33 seq837 158 2e-32 seq33 105 1e-16 seq31 102 1e-15 seq108 91.5 2e-12 >seq110 Length=137954 Score = 273 bits (302), Expect = 3e-67 Identities = 257/327 (79%), Gaps = 3/327 (1%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||| | |||||| |||| |||||||||||||||||||||||| Sbjct 11451 CCCTCGTCGCGCGAGATGAGCTCGTTGGAAAAGGCCAGGCCGGGCATGAGGCCGCGCTTC 11392 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 ||||||||||||||||| ||||| || |||||||||||||| ||||| ||| || |||| Sbjct 11391 TTGAGCCAAAAGATGGCGCAGAAGCTCCCCGAGAAAAAGATTCCCTCCACGACGCAAAAG 11332 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 ||||| |||||| ||||| || ||| ||| || | ||||| | ||||| Sbjct 11331 GCGACGCACCGCTCCGCAAAGCTGGCCATTCCCGA---GTCGCACCACTGGAGGGCCCAG 11275 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 |||||||||| ||| |||| ||||||||||||||| | | ||| || |||||| Sbjct 11274 CGGGCCTTTTTCCGCACGCAGGGGACCGTGTCGATGGCGTGGAGGAGACGGAGCTTCTCC 11215 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | | ||||||| ||| |||||||||||||||||||||||||| ||||||||||| || Sbjct 11214 TCGGAATCCTTGATGTACGTGTCGATGAGGAGCGAGTAGGTCTCCGAGTGGATGTTCTCC 11155 Query 794641 ATGGCGATCTGGAAGCCATAAAAGCAG 794667 | |||||||||||||| || |||||| Sbjct 11154 ACCGCGATCTGGAAGCCGTAGAAGCAG 11128 Score = 219 bits (242), Expect = 7e-51 Identities = 250/329 (76%), Gaps = 10/329 (3%) Strand=Plus/Minus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 |||||| |||||| || || || |||||| |||||||||||||||||| |||| || Sbjct 11773 GACGCCGCTCTTGGCGTATTCCCCGACGCGCTTCTCGAAAAAGTTGGTCTTTCCCTGCAG 11714 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCG-CACCC-G 794009 |||||||| |||||||||| || ||||||| ||| |||||||||| | ||||| | Sbjct 11713 CGAGATCATCTCCATCCACTCAAAGGGGTTGGGGGTCTGGTAGTGCTTTGGGGCACCCAG 11654 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 ||||| ||||||||||||||| ||| || |||||||| |||||| | |||| Sbjct 11653 GGCGACC--AGCAGGCGGTCGGCGCAGAACTCGATGTACTGCTGCATGAGCTTCGAGTTC 11596 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||||||||||| | || || || | |||||||| || || || ||||| |||||||| Sbjct 11595 ATGCCGATGAGCTCTACCGGGAGGGCGTCGCTGACGAATTCCTTTTCGATGTCGACGGCG 11536 Query 794130 TCGATGATGATCTGC---CTGGGCACGTCGGACGACGGCTTGTCGACGAGCATCGTGTAG 794186 | | ||| |||| | || || || || ||| |||||| ||| ||| | ||||| Sbjct 11535 TTGGTGACAATCTCCACGATGCGCTCG-GGGGCGA--GCTTGTTGACCAGCTTGTTGTAG 11479 Query 794187 AGCAGGCAGGCAAAGTCGCAATGCAGACC 794215 |||| ||||||||||||||| || || || Sbjct 11478 AGCATGCAGGCAAAGTCGCAGTGGAGTCC 11450 Score = 134 bits (148), Expect = 2e-25 Identities = 130/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 796186 GCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATA 796245 |||||||| || ||||| ||||| || || || ||||| |||| ||| |||| Sbjct 11088 GCCAGGTTTTCGTTGACGATCCCGTCCGATGCCGCAAAGAAGGCCAGGATGTGGCTGATG 11029 Query 796246 AAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACC 796305 ||||| ||||||| |||| ||| |||||| | | || |||| | |||||| |||| | Sbjct 11028 AAGTGTCGCTCGTTGTCGGACAGCTTGACCCAATCGGCCATGTCCGAGCCGAGATCGATC 10969 Query 796306 TCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCA 796352 || || |||||||| |||||||||||||||||||||||||| ||||| Sbjct 10968 TCTTCCGCGGTCCAGAAGGAGGCCTCGGCCTTTTTGTACATTTCCCA 10922 >seq41 Length=226872 Score = 159 bits (176), Expect = 5e-33 Identities = 200/270 (74%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 1485462 GGCATCGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTC 1485521 |||| | || ||||||||||||||||||| ||||| || ||||||||| |||| || || Sbjct 42145 GGCAGAGCTGAACTTGGTGACGGCCTTGGTTCCCTCGGAAACGGCGTGCTTGGCGAGCTC 42086 Query 1485522 GCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGC--GC 1485579 ||| | | || ||||| ||||||||||||||||| || | | || | || || | Sbjct 42085 ACCGGGAAGCATGAGGCGGACGGCGGTCTGGATCTCTCGCGAG--GAAAGGGTGGCCTTC 42028 Query 1485580 TTGTTAGTGCGCGCCAGGC-GGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGAC 1485638 ||||| || | | || || ||||| ||| | | ||||| |||| || ||||||| Sbjct 42027 TTGTT-GTAGGTGGCAAGCTTTCCGGCTTCGCCGGCAATGCGCTCGAAGATATCGTTGAT 41969 Query 1485639 AAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1485698 || ||||||||||| ||||| || |||||||| || ||||||||| |||||||| Sbjct 41968 GAAGGAGTTCATGATAGACATTCCCTTCTTGGAGATACCGGTGTCGGGGTGAACCTGCTT 41909 Query 1485699 GAGCACCTTGTAAACAAAGGACGAGTACGA 1485728 | |||||||| | ||| |||||||| Sbjct 41908 CAAAACCTTGTAGATGTAGGTGGAGTACGA 41879 >seq837 Length=3602 Score = 158 bits (174), Expect = 2e-32 Identities = 195/262 (74%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||||||||||||||| ||||| || ||||||||| |||| || || ||| | | Sbjct 2280 TGAACTTGGTGACGGCCTTGGTTCCCTCGGAAACGGCGTGCTTGGCGAGCTCACCGGGAA 2339 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGC--GCTTGTTAGT 1485587 || ||||| ||||||||||||||||| || | | || | || || |||||| || Sbjct 2340 GCATGAGGCGGACGGCGGTCTGGATCTCTCGCGAG--GAAAGGGTGGCCTTCTTGTT-GT 2396 Query 1485588 GCGCGCCAGGC-GGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 | | || || ||||| ||| | | ||||| |||| || ||||||| || |||| Sbjct 2397 AGGTGGCAAGCTTTCCGGCTTCGCCGGCAATGCGCTCGAAGATATCGTTGATGAAGGAGT 2456 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||| ||||| || |||||||| || ||||||||| |||||||| | |||| Sbjct 2457 TCATGATAGACATTCCCTTCTTGGAGATACCAGTGTCGGGGTGGACCTGCTTCAATACCT 2516 Query 1485707 TGTAAACAAAGGACGAGTACGA 1485728 |||| | ||| |||||||| Sbjct 2517 TGTAGATGTAGGTGGAGTACGA 2538 >seq33 Length=258575 Score = 105 bits (116), Expect = 1e-16 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 ||||| || | |||||||| ||||||||| | ||||||||||| ||||| || || | Sbjct 159754 CTCTTCGAACTCATCCTCGCGGCCAACTACATGGACATCAAGCCGCTCCTGGACCTGACG 159695 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 ||| ||| || ||| | |||||||| ||| |||| ||||||||||||| ||||| Sbjct 159694 TGCGCGACGGTCGCCTCGATGATCAAGGGAAAGACGCCAGAGGACATCCGCAGCACCTTC 159635 Query 2035749 AACATCAAGTACG 2035761 ||||||| | ||| Sbjct 159634 AACATCACGAACG 159622 >seq31 Length=250787 Score = 102 bits (112), Expect = 1e-15 Identities = 184/260 (71%), Gaps = 13/260 (5%) Strand=Plus/Plus Query 1249562 GCGGCCACGGGCGTCGCCTATCTGCAC-GCGCTCGACCCGCCCGTCGTCCACCGCGATCT 1249620 |||||| ||| | ||||| || ||| ||| | |||||||||| | |||||||| || Sbjct 185650 GCGGCCCGCGGCATGGCCTACCTCCACAGCGGCC-ACCCGCCCGTTCTGCACCGCGACCT 185708 Query 1249621 CAAGAGCAGCAACCTGCTGGTCGACGACGAG-TACAATGTCAAGGTGGCCGACTTTGGTC 1249679 |||||| |||||| ||| ||||||| ||| |||| |||||| ||||||||| | Sbjct 185709 GAAGAGCGCCAACCTCCTGCTCGACGA-GAGCTACACCACCAAGGTCTGCGACTTTGGCC 185767 Query 1249680 TCGCGCGCATCCGCGAGGACAATGCC---ACCATGAC-GCGG--TGCGGCACGCCGGCGT 1249733 || || || ||| | | ||| | |||||| ||| ||||| ||| || Sbjct 185768 TCAGCCGGCTCA---AGGCCCAGGCCCGCAGCATGACCGCGAACTGCGGGACGGTCCAGT 185824 Query 1249734 GGACGGCGCCCGAGGTCATCCGCGGCGAGCGCTACGACGAGCGCGCCGACGTCTACTCGA 1249793 ||| ||| ||||||||| || | | | ||||||||||||| |||||||||||| Sbjct 185825 GGATGGCCCCCGAGGTCCTCGCCAACCGGAGCTACGACGAGCGGGCCGACGTCTACAGCT 185884 Query 1249794 TCGGCATCGTCGCGTGGGAG 1249813 | || ||| ||| |||||| Sbjct 185885 TTGGGATCATCGTCTGGGAG 185904 >seq108 Length=147947 Score = 91.5 bits (100), Expect = 2e-12 Identities = 178/264 (67%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| ||||| || | || |||| ||| ||||| || | |||||| || | ||| ||||| Sbjct 12805 CTGATCGACGTATCKGGCGGTGTTGTTGAAGACACGCAACATGGGGACGATGCCATTGGA 12746 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || | ||||| ||| || | ||||| | || | || Sbjct 12745 TGTACCGTTGGTTCCACGAATGTAGGATTTACTGGCACGAATGTTGTGGGTTGCCAGACC 12686 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || || || ||| || || | ||||| | || || || ||||||||||| || Sbjct 12685 AATTCCACCTGCGTACTTCGAAATCACGGCGCAGCTCTTGAGTGTGTCGTAGATGCCATC 12626 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||||| ||||||| ||||||||| || || || | || ||| || || Sbjct 12625 GATGGAGTCTTCCTTCATTGTCAACAGAAAACAAGAGGACATCTGAGGGTTGTTGGTTCC 12566 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGC 2073803 ||| |||||||| || || || || Sbjct 12565 GGCGTTGAAGAGGGTCGGTGTGGC 12542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916129494357461