Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_022330.1 Length=76586 Score E Sequences producing significant alignments: (Bits) Value seq30 113 2e-20 >seq30 Length=255409 Score = 113 bits (124), Expect = 2e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 66134 CCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGG 66193 || |||||||| | | ||||||| || || ||| ||||| ||||||| ||| ||| Sbjct 78378 CCGACCGGCTCGCTGACCCTGGACGTGGCGCTCGGCGGGGGGGGATACCCGAAGGGGCGG 78319 Query 66194 GTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTG 66253 |||||||| ||||||||||| || || || |||||| | || ||| ||||||||| | Sbjct 78318 GTGGTGGAGATCTACGGCCCCGAGTCCTCCGGGAAGACGACCCTGGCCCTCCACGCGATC 78259 Query 66254 GCC-AATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGA 66312 ||| | ||| |||||| || || | || |||| | ||||| |||||| |||| || Sbjct 78258 GCCGAGTGC-CAGAAGAGGGGCGGGACGGCAGCCTTTGTGGACGCCGAGCACGCCCTCGA 78200 Query 66313 CCCCGAGTACG 66323 |||| |||| Sbjct 78199 TCCCGTCTACG 78189 Score = 98.7 bits (108), Expect = 5e-16 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 66323 GCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAG 66382 ||||| | || || | ||| ||||| |||| ||||| ||||| ||| || || Sbjct 77892 GCCAATTCCCTGGGCATCGACGTCGACGACCTGCTGGTGAGCCAGCCCGACTGCGGGGAA 77833 Query 66383 CAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA--TCGTCGTCG 66440 |||||| || || || ||| || || ||| |||| || ||| | || |||| | Sbjct 77832 ATGGCCCTCGACATTGTCGACAAGCTGGTGCGGTC-GGCG-GCCGTCGACGTCATCGTGG 77775 Query 66441 TTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTC 66500 | ||| || || |||||||| ||||| ||||||||||| || ||||| ||| | Sbjct 77774 TGGACAGCGTCGCCGCCCTGGTCCCGCGGGCCGAGCTCGAGGGGGACATGTCCGACTCGC 77715 Query 66501 ACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTGG 66552 | |||||||||| || || |||||||| |||| ||||| ||| |||| || Sbjct 77714 AGATCGGCCTGCAGGCCCGGCTCATGTCCAAGGCGATGCGGAAGATCACCGG 77663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244947119119033