Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq456 125 5e-24 seq141 125 5e-24 seq386 113 3e-20 >seq456 Length=31050 Score = 125 bits (138), Expect = 5e-24 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||| ||| | || |||| ||||| |||| |||||||| ||||| ||||| Sbjct 6859 CCTCCCCGCAAGCGAAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTC 6800 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| |||| |||||||||||| ||||| || || |||||||| | || Sbjct 6799 AGGGTGCGGCCATCCTCCAATTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGA 6740 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || ||||||| | || | || | || || Sbjct 6739 ATTCCTTCCTTGTCCTGGATCTTGGTTTTGACGTTGTCGATGGTGTCGGACGGTTCCACG 6680 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTG 34974 || | ||| |||||||| || || |||||||||||||| ||||| Sbjct 6679 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTACAAAAATCTG 6636 >seq141 Length=126064 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 |||||| ||||| | |||||||| || | |||| ||||| || ||||| || || Sbjct 117155 TCCTCCTCTCAATCGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACT 117096 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 || | || |||| |||| |||||||||||| ||||| || |||||||| || | || Sbjct 117095 CAGAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTGG 117036 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929 | || |||||||| | || || |||||| | |||| || | |||||| Sbjct 117035 GATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGATGGCTCGAC 116976 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| | || ||||||||||| ||||||||||| || ||||| |||||| Sbjct 116975 ATCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATG 116927 >seq386 Length=39556 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| |||||||||||| || ||||| |||| | | |||| Sbjct 11645 AGGACCAGGTGCAGAGTGGACTCCTTCTGAATATTGTAGTCGCTTAGGGTCCTTCCATCT 11586 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||||||| || || |||| || ||||| || | || | || |||||||| Sbjct 11585 TCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGGATTCCTTCCTTGTCC 11526 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | || | || | ||||||||| | || || ||| Sbjct 11525 TGAATCTTGGTCTTGACATTGTCAATAGTGTCCGAAGGCTCGACATCCAACGTGATAGTC 11466 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||||||||||| |||||||| ||||| Sbjct 11465 TTTCCCGTGAGGGTCTTGACAAAGATTTGCAT 11434 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | | ||||||| ||||| ||| ||||| || ||||| ||||| Sbjct 11890 TTCCTCCTCTTAGACGGAGGACCAAGTGAAGCGTGGATTCCTTTTGGATGTTGTAGTCAC 11831 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | |||| | || |||||||||||||| || || |||| || ||||| || | | Sbjct 11830 TCAAGGTGCGGCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTG 11771 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | || || || ||| | || | ||| | || | Sbjct 11770 GGATTCCTTCCTTGTCCTGGATCTTGGTCTTCACGTTATCAATGGTATCAGACGGTTCAA 11711 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || |||||||| || ||||| ||||| |||||||| ||||| Sbjct 11710 CGTCCAGTGTGATGGTCTTACCAGTGAGTGTCTTCACAAAGATTTGCAT 11662 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| ||||| || ||||| ||||| | | |||| | || Sbjct 12101 AGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCGTCT 12042 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||||||||||||| || ||||| || || ||||| || | || | || |||||||| Sbjct 12041 TCCAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCC 11982 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| | || ||||| | || || ||| Sbjct 11981 TGGATCTTGGTCTTCACGTTGTCAATGGTATCAGATGGTTCCACATCCAGTGTAATAGTC 11922 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| ||||| |||||||| ||||| Sbjct 11921 TTACCAGTGAGCGTCTTCACAAAGATTTGCAT 11890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325688437650281