Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_022988.1 Length=74210 Score E Sequences producing significant alignments: (Bits) Value seq30 107 9e-19 >seq30 Length=255409 Score = 107 bits (118), Expect = 9e-19 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 64680 CCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGG 64739 || |||||||| | | ||||||| || || ||| ||||| ||||||| ||| ||| Sbjct 78378 CCGACCGGCTCGCTGACCCTGGACGTGGCGCTCGGCGGGGGGGGATACCCGAAGGGGCGG 78319 Query 64740 GTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTG 64799 |||||||| ||||||||||| || || || |||||| | || ||| ||||||||| | Sbjct 78318 GTGGTGGAGATCTACGGCCCCGAGTCCTCCGGGAAGACGACCCTGGCCCTCCACGCGATC 78259 Query 64800 GCC-AATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGA 64858 ||| | ||| |||||| || || | || |||| | ||||| |||||| |||| || Sbjct 78258 GCCGAGTGC-CAGAAGAGGGGCGGGACGGCAGCCTTTGTGGACGCCGAGCACGCCCTCGA 78200 Query 64859 CCCTGAGTACG 64869 || | |||| Sbjct 78199 TCCCGTCTACG 78189 Score = 105 bits (116), Expect = 3e-18 Identities = 302/460 (66%), Gaps = 22/460 (5%) Strand=Plus/Minus Query 64869 GCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAG 64928 ||||| | || || | ||| ||||| |||| ||||| ||||| ||| || || Sbjct 77892 GCCAATTCCCTGGGCATCGACGTCGACGACCTGCTGGTGAGCCAGCCCGACTGCGGGGAA 77833 Query 64929 CAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA--TCGTCGTCG 64986 |||||| || || || ||| || || ||| |||| || ||| | || |||| | Sbjct 77832 ATGGCCCTCGACATTGTCGACAAGCTGGTGCGGTC-GGCG-GCCGTCGACGTCATCGTGG 77775 Query 64987 TTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTC 65046 | ||| || || |||||||| ||||| ||||||||||| || ||||| ||| | Sbjct 77774 TGGACAGCGTCGCCGCCCTGGTCCCGCGGGCCGAGCTCGAGGGGGACATGTCCGACTCGC 77715 Query 65047 ACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCT 65106 | |||||||||| || || |||||||| |||| ||||| ||| ||||||| | || Sbjct 77714 AGATCGGCCTGCAGGCCCGGCTCATGTCCAAGGCGATGCGGAAGATCACCGGGTCGCTCG 77655 Query 65107 CCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACG 65163 || || ||| |||| ||| | | | |||||| ||||| ||| |||| | Sbjct 77654 CCCTCAGCAAGTGCACGGTGA---TTTTTCTGAACCAGCTGCGCTCCAAGGTCGG---GG 77601 Query 65164 TGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAG 65223 | |||||| | ||| || |||| || || ||| | | ||||||| | || | Sbjct 77600 TCATCTACGGGTCCCCCGAGGTGACTTCGGGGGGGAACGCTCTCAAGTTCTACTCGTCCG 77541 Query 65224 TCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACC 65283 ||||| | || ||| || | || ||| | ||| | ||| | || Sbjct 77540 TCCGCCTCGACACCCGCCGGA---------AGGAGGTCCTCCCCGAGAACGCCGGGATCC 77490 Query 65284 GCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 65323 || | ||| |||||||||||||||||| |||| |||| Sbjct 77489 GCGTCAAGGTCAAGGTCGTCAAGAACAAGGTGGCGGCGCC 77450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237344020956769