Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq386 127 2e-24 seq141 113 3e-20 seq22 107 1e-18 >seq386 Length=39556 Score = 127 bits (140), Expect = 2e-24 Identities = 170/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CG 29617 |||||| || | ||| || ||||| |||||||||||||| ||||| ||||| || || | Sbjct 11889 TCCTCCTCTTAGACGGAGGACCAAGTGAAGCGTGGATTCCTTTTGGATGTTGTAGTCACT 11830 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 ||| |||||| || || ||||| || |||||| | |||||||| |||||||| || | Sbjct 11829 CAA-GGTGCGGCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTG 11771 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 | || || || ||||| || || || || || || | || | || ||||| |||| Sbjct 11770 GGATTCCTTCCTTGTCCTG-GATCTTGGTCTTCACGTTATCAATGGTATCAGACGGTTCA 11712 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || || || ||||| | || || ||||| || |||||| Sbjct 11711 ACGTCCAGTGTGATGGTCTTACCAGTGAGTGTCTTCACAAAGATTTGCATT 11661 Score = 113 bits (124), Expect = 3e-20 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||| ||||| || ||||| || ||||| ||||| || || || || Sbjct 11433 TCCTCCACGAAGACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCT 11374 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| | ||| || | ||| || |||||| | |||||||| ||||||||||| || Sbjct 11373 TAGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGG 11314 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| || || ||||| || || || || |||||| | || | ||||| ||| | || | Sbjct 11313 AATTCCTTCCTTGTCCTG-GATCTTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCGA 11255 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 | || | || || || ||||| || || ||||| || || ||||| Sbjct 11254 CATCCAACGTGATTGTCTTGCCGGTCAAAGTTTTTACGAAAATCTG 11209 >seq141 Length=126064 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| ||||| ||||| |||||||| || |||||||| ||||| ||||| ||||| Sbjct 117155 TCCTCCTCTCAATCGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACT 117096 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || ||| ||| || | ||| || || ||| | || | | |||||||||||| || Sbjct 117095 CAGAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTGG 117036 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || ||||| || || || || ||||| | || | ||||| || | || | Sbjct 117035 GATTCCTTCCTTGTCCTG-GATCTTGGTCTTGACGTTGTCGATCGTGTCCGATGGCTCGA 116977 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| || || || || || | ||| || || || || ||||| Sbjct 116976 CATCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 116928 >seq22 Length=300247 Score = 107 bits (118), Expect = 1e-18 Identities = 150/204 (74%), Gaps = 5/204 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||| | | ||| |||||||||||||| |||||||| || || |||||||| || | | Sbjct 203635 CCTCCACGAAGACGAAGCACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAGTCGCTC 203576 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || ||| ||| || | ||| || |||||| |||| | | |||||||| || || Sbjct 203575 AA-AGTACGACCATCCTCCAATTGCTTTCCAGCAAATATAAGACGCTGCTGATCGGGAGG 203517 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| || || |||||||| || || || |||||| | || | || ||||| | |||| Sbjct 203516 AATTCCTTCCTTGTCTTG-GATCTTGGTCTTGACATTATCAATCGTATCAGATGGCTCTA 203458 Query 29738 CTTCAAGAGTTATAGTTTTGCCAG 29761 | || | ||| || | ||| |||| Sbjct 203457 CATCCAAAGTGATTGCTTT-CCAG 203435 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 29640 TTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAA 29699 ||| || |||||| | ||||||||||||||||| || ||||| || || ||||| || || Sbjct 203445 TTGCTTTCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTG-AA 203387 Query 29700 TTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGC 29758 | || || |||||| | || | ||||| ||| | || || || | || || || || | Sbjct 203386 TCTTGGTCTTGACATTGTCAATGGTGTCGGAAGGCTCGACATCCAAGGTGATTGTCTTTC 203327 Query 29759 CAGTTAAGGTTTTAACAAATATCT 29782 | || || ||||| || || |||| Sbjct 203326 CGGTCAATGTTTTTACGAAAATCT 203303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385214040349959