Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq217 627 9e-175 >seq217 Length=78499 Score = 627 bits (694), Expect = 9e-175 Identities = 740/1000 (74%), Gaps = 2/1000 (0%) Strand=Plus/Plus Query 157040 CGTGGGAATCATTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGT 157099 |||||||| ||||| | | ||| | || |||| ||||||| | || | ||||||| Sbjct 40570 CGTGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGT 40629 Query 157100 TCGGTGTGCTTATGATTCCAACATTGCTTGCAGCAACTATC-TGCTTCATTGTTGCATTC 157158 ||||| | ||| | ||||| | ||||| ||| | ||| ||||||||| |||||| Sbjct 40630 TCGGTACTATCATGTTCCCAACTCTTCTTGCCGCAGC-ATCATGCTTCATTACTGCATTT 40688 Query 157159 GTAGCAGCACCTCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATG 157218 | || |||||||| || || || ||||| || |||||||| ||||| || ||||| | Sbjct 40689 ATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCTT 40748 Query 157219 TATGGCAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCAC 157278 || || || ||||||||| | || | || | ||||||| ||||||||||| | ||| Sbjct 40749 TACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCAC 40808 Query 157279 TTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTC 157338 ||||||||| | |||||||| || || | || || ||| | |||||||| || || | | Sbjct 40809 TTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTAC 40868 Query 157339 CAACTGGTAGTCTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAA 157398 ||| |||| || | |||||||| |||| | | | || ||||| |||||||||||| Sbjct 40869 CAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGGAA 40928 Query 157399 CTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCT 157458 ||||| || || | || ||||| || ||||| | |||||| | ||| ||||| || || Sbjct 40929 CTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGCA 40988 Query 157459 GCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATG 157518 || || | || || |||||| ||| || | || ||||| |||||| |||| ||| Sbjct 40989 GCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCATG 41048 Query 157519 CCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATT 157578 |||||||||||| || || || |||| ||| | ||||||||||| |||||||| || Sbjct 41049 CCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACATC 41108 Query 157579 CTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCT 157638 |||||||| ||| | || ||| ||| ||||| || || ||||| |||||||||||||| Sbjct 41109 CTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTCC 41168 Query 157639 GCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAAACAGAGTCA 157698 || |||||||| ||| ||||||||||| | | |||||||| || |||| || || Sbjct 41169 GCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAATCC 41228 Query 157699 CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACAC 157758 || | || |||||||| || || ||||| || || |||||||| || || || ||| Sbjct 41229 ACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCAC 41288 Query 157759 GGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCAC 157818 || ||||| || || || |||||||||||||| || ||||||||| | ||||||| Sbjct 41289 GGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTCAC 41348 Query 157819 TTCTTCCTCGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACC 157878 |||||| | || |||||||| | || ||||||| ||| || |||| || |||| Sbjct 41349 TTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCACC 41408 Query 157879 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 157938 ||||| |||||||||||||| ||||||||||||||| | || | || |||| ||| Sbjct 41409 ATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGACGT 41468 Query 157939 GTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCAT 157998 || | ||||||||||| || | | ||||| || | |||||| ||||| || ||||| Sbjct 41469 GTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGCAC 41528 Query 157999 GAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCTG 158038 || ||||| || || ||||| || || ||| | ||| ||| Sbjct 41529 GAACGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTG 41568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545266109303920