Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq217 668 0.0 >seq217 Length=78499 Score = 668 bits (740), Expect = 0.0 Identities = 747/993 (75%), Gaps = 7/993 (1%) Strand=Plus/Plus Query 177547 CGTGGGAATCATTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGT 177606 |||||||| ||||| | | ||| | || ||| | |||||||| || ||||||||| Sbjct 40570 CGTGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGT 40629 Query 177607 TCGGCGTAC--TGATGATTCCAACTCTGTTGGCAGCAACTATC-TGCTTCATCGTCGCCT 177663 ||| |||| | ||| | |||||||| | || ||| | ||| |||||||| || | Sbjct 40630 TCG--GTACTATCATGTTCCCAACTCTTCTTGCCGCAGC-ATCATGCTTCATTACTGCAT 40686 Query 177664 TCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCA 177723 | | || || || || |||||||| ||||| ||||| ||||| || || || || || Sbjct 40687 TTATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTC 40746 Query 177724 TGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTC 177783 | || ||||| ||||||||| | || | || | || |||| ||||||||| || | | Sbjct 40747 TTTACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGC 40806 Query 177784 ACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 177843 ||||||| ||| | |||||||| || || | || || ||| |||| ||||| || || | Sbjct 40807 ACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCT 40866 Query 177844 TCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGG 177903 |||| | || || | ||||||||| |||| | | | || ||||| |||||||||| Sbjct 40867 ACCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGG 40926 Query 177904 AACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTG 177963 ||||||| || || || || ||||| || ||||| | |||||||| ||| |||||||||| Sbjct 40927 AACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTG 40986 Query 177964 CAGCAGCATCCGCAGTCTTTCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTA 178023 |||| || |||| ||||| || ||| || | || ||||| ||||| |||| | Sbjct 40987 CAGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCA 41046 Query 178024 TGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATA 178083 |||||||||||||| || || || |||| |||| | || ||||| || || ||||| | Sbjct 41047 TGCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACA 41106 Query 178084 TCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCT 178143 |||||||||||||| | || ||| ||| ||||| || || ||||| |||||| | |||| Sbjct 41107 TCCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCT 41166 Query 178144 CTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGT 178203 | || ||||| || ||| |||||||| || | ||||||| || || |||| || | Sbjct 41167 CCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAAT 41226 Query 178204 CCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCC 178263 || || | || |||||||| || || ||||| ||||| || ||||| ||||| || | Sbjct 41227 CCACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTC 41286 Query 178264 ATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGC 178323 | || ||||| || ||| | ||||||||||| || |||||||||||||| ||| | || | Sbjct 41287 ACGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTC 41346 Query 178324 ACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCA 178383 |||||||| | || ||||||||| | || ||||||| |||||| | ||||| |||| Sbjct 41347 ACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCA 41406 Query 178384 CCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGAC 178443 ||||||| || |||||||| |||||||||||||||||| | || ||||| | |||| Sbjct 41407 CCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGAC 41466 Query 178444 GTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGC 178503 ||||| ||||||| ||||| ||| | |||||||||||| ||| || ||||| ||||||| Sbjct 41467 GTGTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGC 41526 Query 178504 ACGAAAGAAATAGCACATAACTTCCCGCTTGAT 178536 ||||| | ||| || |||||||| || |||||| Sbjct 41527 ACGAACGTAAT-GCTCATAACTTTCCTCTTGAT 41558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605658879646840