Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq21 183 2e-40 seq150 136 3e-26 seq23 98.7 7e-15 >seq21 Length=285816 Score = 183 bits (202), Expect = 2e-40 Identities = 927/1453 (64%), Gaps = 37/1453 (3%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 |||||||||||||| | || || ||| |||||||| || ||| | | ||| Sbjct 157966 ATACCATTGGCATCAATGTCGAAGCAGACATCAATTTGTGGTTGCCCACGAGGCATAGGA 158025 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || || | || || |||| || |||| || || || || | ||||| Sbjct 158026 GGGATTCCGTCGAGGTTGAACTTTCCGAGGATATTGTTGTCCTTGGTCATCGAACGTTCT 158085 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 || ||||| | |||||| ||| | | ||| || || | || || | || |||| Sbjct 158086 CCTTCGAAGACCTGGATAAGAACACCGGGTTGGTTGTCGGCGTAGGTAGAGAAGG-TCTG 158144 Query 281621 GATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 | | || || ||||| || |||||||| | || | | ||||| | || || || Sbjct 158145 GGTCTTCTTGGCAGGAACGGTAGTGTTTCTCTTGATGAGGGTAGTCATGACTCCTCCTGC 158204 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 281739 ||||| | |||||| ||||||||||||||||| | |||| || | ||| ||||| Sbjct 158205 GGTTTCGAGACCAAGGGAAAGAGGAGTGACATCCAACAGGAGAAGTTCGGAAAGCTTTTC 158264 Query 281740 --ATCAGTTTGACCAAC--AAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 281795 | || || | | |||| |||| || || | | || || ||||||| |||| Sbjct 158265 GGACTTGTCGGATCCGCTCAAGA-TAGCGGCCTGGACGGTGGCTCCGAATGCAACGGCTT 158323 Query 281796 CATCAGGATTAACAG--TTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTG 281853 |||| || || | || || || |||| || || ||||| || | | || | | | Sbjct 158324 CATCGGGGTTGATAGACTTGCAG--AGTTCCTTTCCGTTGAAGAACTCAGTGAGCA-TGG 158380 Query 281854 TCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATT 281912 ||| | ||| || ||||| | ||||||||||| | || ||||||| || | | Sbjct 158381 TCTGGATCTTGGGGATACGGGTGGATCCTCCAACAAGGACGATTTCATCAACTCCGGCCT 158440 Query 281913 TATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTA-AACAAG 281971 | | || | ||| ||||| ||||| ||| || | | | ||| || || Sbjct 158441 TGGAGATCTTGGCATCTCTCAAAACCTTTTCGCAGGGCTCCATGC-ACTTCTTGAAGTAG 158499 Query 281972 TC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTT 282029 || || ||| || ||||| || | || | ||| |||| |||| || || | Sbjct 158500 TCCATGTTCAAG--TCCTCGAAACGGGCACGGGTGATGGTGGCATTGAAATCGATACCGT 158557 Query 282030 CGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCAC 282089 | || | || |||| |||||| | ||||| || ||||| || | ||| || |||| Sbjct 158558 CAAAGAGGGAGTCAATTTCAATGTGGGCCTGAGTAGAGGAAGAAAGAGTACGCTTGGCAC 158617 Query 282090 GTTCACATGCTGTCCTTAGTCTTCGTA-AG-GCTTTTGCTGATTGAT--TCAAATCTGTT 282145 |||| || || || | || | || | || || |||| || | ||| || | Sbjct 158618 GTTCGCAAGCGGTACGAAGACGACGGAGAGAGC----GCTGGTTCTTGCTCATGTCCTTC 158673 Query 282146 TTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCA 282205 || | | ||||||||| || | | | || | || ||||| ||||| || Sbjct 158674 TTGTGTCGTCTCTTGAAGTCGGTGAGGAAGTAGTCAACCATTCGGTTATCGAAATCCTCT 158733 Query 282206 CCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGAC 282265 |||||||| | |||| ||| | || || | |||| ||| | ||| ||||| | | Sbjct 158734 CCTCCCAAGTGGGTATCTCCGGCAGTGGCCTTGACTTCGAAGATTCCTTCTTCGATGGTA 158793 Query 282266 AAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTG 282325 | ||||| |||||| ||| || || || | ||| ||||| || |||||| |||| | Sbjct 158794 AGAAGAGAGACATCAAAGGTACCTCCTCCAAGATCGAAAATGAGGACATTCTTTTC---G 158850 Query 282326 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 ||| || || || | || || || | ||||| || || ||||| || ||||| | Sbjct 158851 TCTCCCTTCTTGTCCAATCCGTAGGCGATGGCAGCGGCGGTAGGTTCGTTGATAATACGA 158910 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 | ||||||||| || | ||| ||| ||||| || || ||||| | || || ||||| Sbjct 158911 AGAACATTAAGTCCGGAAATGGATCCGGCATCCTTGGTAGCTTGACGCTGAGAGTCGTTG 158970 Query 282446 AAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCT 282505 || || ||||| || || | ||| || | | ||||| || || | || || || Sbjct 158971 AAGTAAGCAGGTACGGTGACAACAGCGTTCTTGACTTCCTTGCCCAAGTATGCCTCGGCA 159030 Query 282506 GTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA--GAATATTGCTTGG 282563 | | ||||| || | | || ||| || |||| ||| | ||| | ||||| Sbjct 159031 ATGTCCTTCATCTTCGTAAGAACCATGGAACTGATTTCTTCGGCCTTGAAGGT--CTTGG 159088 Query 282564 ATTCATTTTGATATGATAC-TTCAAAATATGGTTTATTACCAA--CATTAATAACTTTAA 282620 |||| | || || || | || || | | | | |||||| | Sbjct 159089 ATTCTCCCTTGTACTCGACCTTGATGATGGGGGTACCTCCGGGTCCGGAGATAACTCCGA 159148 Query 282621 ATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATC 282680 | ||||| | ||||| || | ||| || ||| | || | | || || |||| Sbjct 159149 AAGGCCAGTGCTTCATGTCAGCTTGGACGGCGGCATCAGTGAATTTGCGTCCGATCAATC 159208 Query 282681 GTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTC 282740 | || || || || | || || | ||| | || || ||| | ||||| ||||||| Sbjct 159209 GCTTGGCGTCGAAGACGGTGTTATCGGCATTCATGGCGGCCTGAGACTTGGCAGCATCTC 159268 Query 282741 CAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGAT 282800 |||| ||| | || ||||| || || | |||||| || || || || || |||||||| | Sbjct 159269 CAATAAGACGCTCGGTCTCAGTGAAGGCAACATAAGAAGGGGTAGTACGGTTACCTTGGT 159328 Query 282801 CATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTC 282860 | || ||||| ||||| || |||||||||| ||||| ||||| | || |||| Sbjct 159329 CGTTGGCAATGATTTCGACACGGTCATTTTGCCAAACACCGACACACGAGTAGGTGGTTC 159388 Query 282861 CTAAATCAATACC 282873 | | |||||| || Sbjct 159389 CAAGATCAATTCC 159401 >seq150 Length=115733 Score = 136 bits (150), Expect = 3e-26 Identities = 253/369 (69%), Gaps = 7/369 (2%) Strand=Plus/Plus Query 282185 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 282244 || |||| |||||||||||| |||||||| | || || || ||| || || | Sbjct 55189 AGTCGATAATCAAAATCTTCTCCTCCCAAATGGGTGTTACCACTCGTGGCAAGGACCTCA 55248 Query 282245 AAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAA 282304 |||| || | |||| |||||||| || || || |||||||||||||| |||||| Sbjct 55249 AAAACGCCGTTGTCAATGGACAAAAGTGTCACGTCGAAGGTTCCACCACCCAAATCAAAG 55308 Query 282305 ATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCA 282364 | | | || ||| | |||||| || || || || ||||||| ||||| || Sbjct 55309 ACCAAAATGTTTTCTTCGTGGTCTTG---CTTGTCGAGTCCGTACGCAATGGCAGCGGCT 55365 Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424 || ||||| || |||| | | || || | || || || | || |||||||| || Sbjct 55366 GTGGGTTCGTTGATAACACGCTCAATTTTCATGCCTGCGATGGTCCCGGCATCTTTCGTT 55425 Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCT 282484 || || | ||| | |||||||| ||||| || || || | ||||||| | ||||| Sbjct 55426 GCCTGCCGTTGGGCGTCGTTAAAGTATGCGGGGACGGTCACTACGGCATGCTTGACTTCC 55485 Query 282485 TTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATT--GATGAAATTT 282542 |||| | ||| || || |||| ||||||||| | || ||||||| | || |||| Sbjct 55486 GTTCCGAGATAGGCTTCGGCGGTTTCTTTCATTTTTCGTAGAATCATTCCGCTG--ATTT 55543 Query 282543 GTTCTGGAG 282551 ||| |||| Sbjct 55544 CTTCAGGAG 55552 >seq23 Length=297195 Score = 98.7 bits (108), Expect = 7e-15 Identities = 193/285 (68%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 282187 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 282246 ||| | ||| |||||||| |||||||| | |||| || || || |||| ||| Sbjct 25778 ACGTTGATCGAAATCTTCTCCTCCCAAGTGGGTATCACCGTTGGTGGCCAARACTTCGAA 25837 Query 282247 AAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306 || || || | | ||| | ||| ||||| || || || || | |||||||| Sbjct 25838 AACACCGGAGTCGATGGTCAACAAAGTGACATCGAATGTACCTCCTCCAAGATCAAAAAC 25897 Query 282307 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 ||| ||||| |||| || | | || || | ||| || |||| ||||||||||| Sbjct 25898 AAGAACATTGGATTCTC---CTCCGGTCTTGTCCATACCGTAGGCAATGGCAGCAGCAGT 25954 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 || || || || || | | || || | |||| || |||| ||||| || ||||| Sbjct 25955 AGGCTCGTTGATGATACGCTCGACCTTCATTCCAGAGATGGTTCCGGCATCCTTGGTGGC 26014 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 ||| | || | |||||| || || ||||||||||||| ||| || Sbjct 26015 TTGACGCTGGGCATCGTTGAAGTAAGCAGGAACAGTAACAACAGC 26059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740576443744374