Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq3 111 2e-19 seq141 105 7e-18 seq386 102 8e-17 seq22 84.2 2e-11 >seq3 Length=497493 Score = 111 bits (122), Expect = 2e-19 Identities = 107/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 |||||||| | ||| | ||| || |||| || ||||| ||||| ||||||||||||||| Sbjct 135391 CCTCCTCGGAGACGAAGAACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCGCTC 135332 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || | ||||| | ||| || || ||| |||| |||||||| ||||| ||||| Sbjct 135331 AAGGTGCGTCCA-TCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCAGGAGG 135273 Query 137304 TATGCCTTCTTTGTC 137318 || ||||| ||||| Sbjct 135272 GATTCCTTCCTTGTC 135258 >seq141 Length=126064 Score = 105 bits (116), Expect = 7e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| || |||| || ||||| | || ||||| ||||| ||||||||||| ||| Sbjct 117154 CCTCCTCTCAATCGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACTC 117095 Query 137245 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | || |||| || || | ||| || || ||| |||| |||||||||||||| || | Sbjct 117094 AGAGT--TCGACCATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTG 117037 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||| ||||| || || || | | || | |||||| | || || | Sbjct 117036 GGATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGATGGCTCGA 116977 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | || | ||| | ||||| ||||| | || || ||||| |||||||| Sbjct 116976 CATCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 116928 >seq386 Length=39556 Score = 102 bits (112), Expect = 8e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | ||||| |||| |||||||| ||||| || ||||| ||||| Sbjct 11432 CCTCCACGAAGACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTT 11373 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| | ||| || |||||| | |||| | |||||||| ||||| Sbjct 11372 AGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGA 11313 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| || || || | | || | ||||| | || || || Sbjct 11312 ATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCGACA 11253 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTG 137408 || | || | |||||||||||||| ||||||||||| || || Sbjct 11252 TCCAACGTGATTGTCTTGCCGGTCAAAGTTTTTACGAAAATCTG 11209 >seq22 Length=300247 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | || ||||||| || ||||| || || ||||| || |||||| Sbjct 203635 CCTCCACGAAGACGAAGCACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAGTCGCTC 203576 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | || || | ||| || |||||| | || ||||| |||||||||||||| Sbjct 203575 AAAGTACGACCATCCTCCAATTGCTTTCCAGCAAATATAAGACGCTGCTGATCGGGAGGA 203516 Query 137305 ATGCCTTCTTTGTC 137318 || ||||| ||||| Sbjct 203515 ATTCCTTCCTTGTC 203502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488537288626800