Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq110 159 3e-34 seq456 131 2e-25 seq141 109 5e-19 seq386 96.9 3e-15 seq22 82.4 7e-11 >seq110 Length=137954 Score = 159 bits (176), Expect = 3e-34 Identities = 345/511 (68%), Gaps = 5/511 (1%) Strand=Plus/Minus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||| || |||||||| ||||| |||||||| || || |||| || ||| || | | ||| Sbjct 11758 GTATTCCCCGACGCGCTTCTCGAAAAAGTTGGTCTTTCCCTGCAGCGAGATCATCTCCAT 11699 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCG 120473 |||| || |||||| | | ||| || || |||| || ||||| || Sbjct 11698 CCACTCAAAGGGGTTGGGGGTCTGGTAGTGCTTTGGGGCACCCAGGGCGACCAGCAGGCG 11639 Query 120474 GTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCAC 120533 ||| || ||||| ||||||| |||| || || ||||||||| | | | | || Sbjct 11638 GTCGGCGCAGAACTCGATGTACTGCTGCATGAGCTTCGAGTTCATGCCGATGAGCTCTAC 11579 Query 120534 CGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGA 120592 ||| | || | || ||| || ||||| || ||||| || || | ||| || | | Sbjct 11578 CGGGAGGGC-GTCGCTGACGAATTCCTTTTCGATGTCGACGGCGTTGGTGACAATCTCCA 11520 Query 120593 GCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGT 120652 || | | || | ||||| | | || ||| |||| || ||| ||||||| Sbjct 11519 CGATGCGCTCGGGGGCGAGCTTGTTGACCA-GCTTGTT--GTAGAGCATGCAGGCAAAGT 11463 Query 120653 CCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGA 120712 | ||| || |||||||||||||| || ||||||||| ||| | |||||||||||||| Sbjct 11462 CGCAGTGGAGTCCCTCGTCGCGCGAGATGAGCTCGTTGGAAAAGGCCAGGCCGGGCATGA 11403 Query 120713 TGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCA 120772 ||| | |||||| | || |||||| ||||| ||||| || || | ||||||| Sbjct 11402 GGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAGCTCCCCGAGAAAAAGATTCCCTCCA 11343 Query 120773 CGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCA 120832 ||| | ||||||||| ||||| || || | ||| | |||| ||||| | Sbjct 11342 CGACGCAAAAGGCGACGCACCGCTCCGCAAAGCTGGCCATTCCCGAGTCGCACCACTGGA 11283 Query 120833 TGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 |||||| ||||||||| |||||||| || Sbjct 11282 GGGCCCAGCGGGCCTTTTTCCGCACGCAGGG 11252 >seq456 Length=31050 Score = 131 bits (144), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||| || ||||| || ||||| |||| || ||| | | | ||||| | Sbjct 6838 AAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCCAA 6780 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || || | ||||| ||||||||||||||||| || ||||||||||| ||| Sbjct 6779 TTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGGAT 6720 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| |||| | || | ||||||| || |||||||| | ||||| ||| ||||| Sbjct 6719 CTTGGTTTTGACGTTGTCGATGGTGTCGGACGGTTCCACGTCCAGGGTGATGGTCTTGCC 6660 Query 133634 GGTCAGAGTTTTTACGAAAATCTG 133657 ||||| || ||||| |||||||| Sbjct 6659 AGTCAGGGTCTTTACAAAAATCTG 6636 >seq141 Length=126064 Score = 109 bits (120), Expect = 5e-19 Identities = 151/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||| || || || || |||||||| | || || ||| | ||||| | Sbjct 117133 AAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACTCAGAGTTCGACCA-TCCTCCAA 117075 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || || | || || || ||||| || || ||||| ||||||||||| ||| Sbjct 117074 TTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCCTGGAT 117015 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | |||||| | ||||| || |||| |||| ||| || || Sbjct 117014 CTTGGTCTTGACGTTGTCGATCGTGTCCGATGGCTCGACATCGAGAGTGATGGTCTTTCC 116955 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGG 133662 ||| || || || ||||| || ||||||| Sbjct 116954 GGTGAGGGTCTTGACGAAGATTTGCATGG 116926 >seq386 Length=39556 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || |||| | | |||||| || ||||| || ||||||||||| |||| Sbjct 11351 TGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATC 11292 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| ||||| | ||||| || || | |||| || |||||| Sbjct 11291 TTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCGACATCCAACGTGATTGTCTTGCCG 11232 Query 133635 GTCAGAGTTTTTACGAAAATCTG 133657 |||| |||||||||||||||||| Sbjct 11231 GTCAAAGTTTTTACGAAAATCTG 11209 >seq22 Length=300247 Score = 82.4 bits (90), Expect = 7e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 133539 TGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTG 133598 ||||| || ||||| || ||||||||||| ||||| ||||| | |||| ||| Sbjct 203420 TGCTGATCAGGAGGAATTCCTTCCTTGTCCTGAATCTTGGTCTTGACATTGTCAATGGTG 203361 Query 133599 TCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCT 133656 |||| ||||| || || | ||||| || || ||||||| |||||||||||||||| Sbjct 203360 TCGGAAGGCTCGACATCCAAGGTGATTGTCTTTCCGGTCAATGTTTTTACGAAAATCT 203303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483414159006760