Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq323 179 9e-40 seq3 170 5e-37 seq108 149 1e-30 seq240 113 1e-19 seq229 87.8 4e-12 >seq323 Length=53255 Score = 179 bits (198), Expect = 9e-40 Identities = 780/1212 (64%), Gaps = 28/1212 (2%) Strand=Plus/Minus Query 120458 GGGTTTTCGAGTTTAGTTCCGCCTGTTTTCTTACCCATTTTCCAGTTGATCGCAGTCATC 120517 ||||| |||| |||| || ||||| ||||| ||||| ||||| |||| |||||| Sbjct 33519 GGGTTGTCGACCTTAGCACCTCCTGTCTTCTTTCCCATCTTCCACAAGATCTTGGTCATC 33460 Query 120518 TTACAAGAACACTTTGCGGTTCTCACATGAATA--ATAGGAGCAA-ATCCAGGCTTAAGC 120574 || |||| | ||| ||||| | | | ||| | | ||| ||| |||||||||| || Sbjct 33459 TTGCAAGCAACCTTGGCGGTACG-AGA-GAAKACAACAGG-GCAGTATCCAGGCTTGAGG 33403 Query 120575 TTACCAGGATGTTCTTGGACAGAAACCATTGCTGTGAATTTCTTAACAGGCTTACAGATA 120634 |||||| || |||||||| | || | || ||||| |||| | |||||| || | Sbjct 33402 ACACCAGGGTGCTCTTGGACGGCGACAAGGGCGGTGAAGCTCTTGATAGGCTTG-AGTTC 33344 Query 120635 -CCATCCGTAGTTTTATAAATAATATCACCAGCCTTTGGCATATTATCCTTTACAAGACC 120693 || ||| | || || || || ||||||| || | | | |||||| | | ||| Sbjct 33343 TCCGTCCTTTTCGTTGTAGATGATGTCACCAGGGTTAACCTTCTCATCCTTGGCGATACC 33284 Query 120694 CTTAATAGACATACCAATATTATCACCAGG--CAA-ACATTCTGTAAATTTCTTATGATG 120750 ||| || || | ||||| | |||||| || | |||| || ||||| || || Sbjct 33283 CTTGATGGAAAGACCAACGGAGTTACCAGGTCCAGCAGATTCGAGAACCTTCTTGTGCTG 33224 Query 120751 CATTTCCATAGAAAACATCTTACAACCTGTGATGTTATTGGGGGCAAAGGAAAGAGGGTC 120810 ||| || || || ||||| || ||| ||| || | || | |||| Sbjct 33223 ---TTCGATGGAGAAAATCTTCTTTCCCTTGAGGTTGGAAGGAACGAATCCGACTTGGTC 33167 Query 120811 ATCAACTTTAGCGACACCTTGTTCAATCCTGCCTGTAATGATTGCACCAACACCCTTAAT 120870 | || | | || ||||| | | || ||||| |||||| |||||||| Sbjct 33166 ACCAGGTCGAAGAGTTCCCTGTTCGACGGTACCGCAGATGATCTGACCAACTCCCTTAAT 33107 Query 120871 ATTGTATACACCACTCACAGGGATTCTAAGTGGAGCATCAATATTACGTGTTGGAGGAGT 120930 ||||| | ||||| | | ||| | ||||| | ||| | |||||||| Sbjct 33106 GTTGTAGATGTTGGAAACAGGAAGACGAAGGGCGGCATCGGGTTCACGCTTGGGAGGAGT 33047 Query 120931 TACAAATTTTTCAAGGGCATCCAGAAGTGTCACACCTTTAATCT-GAGTTGTAGGATTAA 120989 | | || | |||||||| | || | | || | |||| || | | || | Sbjct 33046 GATGTAGTTGTTGAGGGCATCAACAATGGACTTTCCAGTGATCTTGACCT-TGGGGGTCT 32988 Query 120990 TATTAGCAGCCCAACCATCATACCAAGGCATCTTG------TCAGTTGGCTCTGTGAGAT 121043 | || |||| ||| || | |||||||| |||| ||| | || | | Sbjct 32987 TGTTGGCAGTCCATCCCTTGTACCAAGGAGCCTTGGCGGGGTCAACAGCGTCAACCAAGT 32928 Query 121044 TGTCACCATTGAATCCAGAATACGGAATGAAAGGAATTTTCTTGGGCTTCATACCAACTT 121103 |||| || | |||||| || || || |||||||||| ||||| ||||| | ||||| Sbjct 32927 TGTCGCCGTGGAATCCGGAGTAAGGGATGAAAGGAACCTTCTTTGGCTTGAAACCAATCA 32868 Query 121104 GTTGAAGCAT-TGAGCTCATTTCTGTCTTAATCTCGTCAAAGCGTGTCTGAGACCAATCA 121162 ||||||||| | | | ||| || ||| || |||| || || || |||||| | Sbjct 32867 TTTGAAGCATCTTAACGAATTCCTC-CTTGATTTCGTTGAATCGGTCCTCAGACCAGTTG 32809 Query 121163 CATGAATCCATCTTGTTGATTCCAACAATAACTTTCTCAATACCCAAAAGAGCAAGAATA 121222 || || ||||||||||||||||| |||| | || ||||| ||||||||| |||| | Sbjct 32808 CAGGAGTCCATCTTGTTGATTCCGACAAGGATTTGCTCAACACCCAAAAGGTAGAGAAGA 32749 Query 121223 CGTGCGTGAAAACGTGTTTGACCTTGTGGGATTCCA-GCAGAACGATCGCCTTTCGCAAT 121281 || ||||| ||| || ||||||| | |||| || | |||| | || || || Sbjct 32748 CGGGCGTGCTGACGGGTCTGACCTTCATCAACTCCAAGCTTGGC-ATCGGCCTTGGCGAT 32690 Query 121282 AGCAGATTCAAAACCAtttttttCAGCAGGAATAAGAATAAAAGCAGCATCGGCT-TGTC 121340 || | ||| ||||| || || ||||||| | || | | | |||| || || | Sbjct 32689 GGCGGCTTCGAAACCTCCCTTCTCGGCAGGAACCAAAAGCATACCGACATCAGCGGTGGC 32630 Query 121341 CGACGCCTGAAATCATATTCTTAATAAAGTCAATATGGCCTGGTGCATCAATAATAGAAT 121400 || || | ||||| ||||| || | || | || || || ||||| | ||| | | Sbjct 32629 AGAT-CCGGTGATCATGTTCTTGATGTAATCCTTGTGTCCAGGGGCATCGACAATGGTGT 32571 Query 121401 AATGATAAGAATCTGTGTAAAATTCCTTAGTATTACAATTTACTGTAATTCCGCGCTCAC 121460 | || || || ||| | || ||||| || || || | | |||| || || |||| Sbjct 32570 AGTGGTACTTCTCAGTGAAGAACTCCTTGGTGTTGCACTGGATGGTAACACCACGGTCAC 32511 Query 121461 GCTCTTCCTTGTTGTTATCCATGTAATAAGCAAATGCAAAACTAGATTTGCCGTTTGCGT 121520 ||||||||||| |||| | ||| || || ||| | || || || || || || Sbjct 32510 GCTCTTCCTTGCACGTATCAAGGTAGTACGCGAATCCGAAGGAGGACTTTCCCTTCTCGG 32451 Query 121521 CGGCAAGTTCCTGCAACTTCGCCATCTCACGAGCATTTATGCCTCCCAATTTAAAGATAA 121580 |||| || || | | ||| ||||||||||| | || ||||| || || || | Sbjct 32450 CGGCGAGCTCGTTAAGCTTAGCCATCTCACGCTCGGGGATTCCTCCTTGCTTGAAAATCA 32391 Query 121581 GATGACCGGTTGTTGTTGACTTTCCCGAGTCAACTTCACCACAGACCACCAAAGATATAT 121640 |||||| || || ||||| || | || || | || ||||| |||||||| | || Sbjct 32390 AGTGACCGCAAGTAGTCGACTTACCGGCATCGACGTGTCCGCAGACAACCAAAGACAAAT 32331 Query 121641 GTTGCTTTTCAC 121652 ||| ||| |||| Sbjct 32330 GTTCCTTATCAC 32319 >seq3 Length=497493 Score = 170 bits (188), Expect = 5e-37 Identities = 338/494 (68%), Gaps = 13/494 (3%) Strand=Plus/Plus Query 110670 GGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTG 110729 ||| |||| | |||||| ||||| ||| | | || | | | | || || | ||| || Sbjct 139296 GGTACTTCCAATGGACTGGTTCCTATGCTTCGCGTTTACGATGTGACAGCGAGATACGTT 139355 Query 110730 AATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCA 110786 ||||||| ||| ||| | ||| |||||||| | || | ||||| |||||||| Sbjct 139356 GATCAAGGAGGTGGAAAGCGGCCTGGTGCATTTGCTGTTTACATTGAACCCTGGCATTCG 139415 Query 110787 GATATATTTGAA-TTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACG 110845 || || || || |||||| | || || || || || |||||||| |||| || Sbjct 139416 GACATTTTCGACGTTCTTA-ATCTGAAAAAGAACCACGGGAAAGAAGAACAGCGAGCTCG 139474 Query 110846 TGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGG 110905 ||| ||||||| | | ||||| | ||||| || |||||||| || | | ||| Sbjct 139475 AGATCTATTTTACGGCCTATGGATCCCTGATTTGTTTATGAAACGAGTAGAGAACGATGA 139534 Query 110906 CATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATAT-GGAAAAG 110964 | ||| ||| |||||||| ||| | ||||| || | || || | ||||||| Sbjct 139535 AAACTGGAGTCTGATGTGTCCCGATCAATGCCCTGGCCTCCCAGA-GTGCAGCGGAAAAG 139593 Query 110965 AGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGT---TTCGCAAACAAATTC 111021 | ||||| || || || |||||||| ||||||||||| || | ||||| || || | Sbjct 139594 ARTTTGAGGAACTATATGAAAAATACGAAAAAGAAGGAAAATATGTTCGC---CAGATGC 139650 Query 111022 CAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATA 111081 | || | ||| | |||| | ||| || ||||| ||| | ||||| ||||||||||| | Sbjct 139651 CTGCCCGAGAGGTATGGTCCGCAATTCTGGAATCCCAAATCGAAACAGGAACTCCTTACA 139710 Query 111082 TTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGT 111141 | | ||||| ||| |||| ||| ||| |||| |||| | ||||||||| | | Sbjct 139711 TGCTATATAAGGATGCCGCTAATGAAAAAAGTAACCAAAAGAATATTGGAACAATTCAAT 139770 Query 111142 CTAGTAATTTGTGC 111155 |||||| | ||| Sbjct 139771 GCAGTAATCTATGC 139784 >seq108 Length=147947 Score = 149 bits (164), Expect = 1e-30 Identities = 317/474 (67%), Gaps = 3/474 (1%) Strand=Plus/Plus Query 110667 AAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATAT 110726 || ||| | || | ||| | || || ||||| | ||||||||| |||| || ||| Sbjct 12737 AACGGTACATCCAATGGCATCGTCCCCATGTTGCGTGTCTTCAACAACACCGCCMGATAC 12796 Query 110727 GTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCAT 110783 || |||| ||||| ||| | || || |||| || || | || || ||||| Sbjct 12797 GTCGATCAGGGTGGAGGCAAGCGCAAGGGAAGCATTGCCATTTACTTGGAGCCCTGGCAC 12856 Query 110784 TCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCA 110843 ||||||| |||| || ||||| ||||| ||||| || || |||| | | ||| Sbjct 12857 GCAGATATCTTTGCCTTTTTAGATCTTCGCAAAAACCACGGGAACGAAGCCGATCGCGCA 12916 Query 110844 CGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAAT 110903 |||||||| ||||| | | ||||| | || | |||||| ||||||| | | || Sbjct 12917 CGTGATTTGTTTTACTCTCTCTGGATCCCTGACCTGTTCATGGAACGTGTCAAGGCCAAC 12976 Query 110904 GGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAA 110963 || | ||| | | |||||||| | | || ||||| | ||| | ||| | Sbjct 12977 GGGACATGGACGTTGATGTGTCCCGACGAGTGCCCCGGTCTCCCCGATTGCCACGGACAR 13036 Query 110964 GAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCA 111023 ||||| | || | |||||||| || || |||||||||||| |||| || ||||| Sbjct 13037 GAGTTCAAGGAATTGTACGAAAAGTACGAGAAAGAAGGCAAGGGTCGCCAAACAATTCAG 13096 Query 111024 GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATT 111083 || || | || |||||| |||| | || || || || ||||| ||||| ||||| || Sbjct 13097 GCGCAGCAGCTCTGGTTCGCAATCTTGGACTCGCAGGTCGAAACAGGAACCCCTTACATG 13156 Query 111084 TTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATT 111137 |||| || ||||| || ||| || |||||| || || ||||| ||| Sbjct 13157 GTGTACAAGGATCACTGCAACAACAAGTCGAATCAACAAAACTTGGGAACCATT 13210 >seq240 Length=79559 Score = 113 bits (124), Expect = 1e-19 Identities = 137/183 (75%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 || ||| |||| | ||| | || |||||||| ||||||| || ||||| |||||| | Sbjct 15337 CAGTTGCGTGACGACGATGTGATTTTGTTCAATCGGCAACCTTCGCTGCACAAAATGAGT 15396 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGACATTTCGATTAAATGTAAGTGC 305427 || |||| |||| |||||| ||| | |||| | ||| |||||||| ||| | ||| Sbjct 15397 ATTATGGGACATAGAGTCAAGGTACTCGACTGG-TCGACTTTTCGATTGAATCTCAGT-- 15453 Query 305428 TTGTACGCCT---TATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 ||||| || || ||||| || ||||||||||||||||||||| | || || ||||| Sbjct 15454 -TGTACATCTCCCTACAATGCCGACTTTGATGGAGATGAAATGAATCTCCACGTTCCTCA 15512 Query 305485 ATC 305487 || Sbjct 15513 GTC 15515 >seq229 Length=78489 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/159 (74%), Gaps = 8/159 (5%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| ||||||| | || || ||| | || | | | || || ||||| || | || |||| Sbjct 53392 GTTTTGTTCAACCGACAGCCCTCATTACACAGAGTTTCAATCATGGCACACAGAG-CAAA 53450 Query 305390 GTATTATCTGGATTG----ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGC 305445 | | || ||| || ||||||||||| ||| | | | |||| | ||||||||||| Sbjct 53451 GG-TCAT--GGAGTGGAGAACATTTCGATTCAATATTTGCGTTTGTGCTCCTTATAATGC 53507 Query 305446 GGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 ||||||||||| ||||| |||||||||||| | || || Sbjct 53508 TGATTTTGATGGTGATGAGATGAATATGCATCTGCCCCA 53546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186796088563139