Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq456 105 4e-18 seq386 91.5 1e-13 seq141 89.7 3e-13 >seq456 Length=31050 Score = 105 bits (116), Expect = 4e-18 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | ||| || | |||||| || || ||| || || || |||||||| ||| Sbjct 6859 CCTCCCCGCAAGCGAAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTC 6800 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||||||| ||||||||||| || | ||||||||| || | || Sbjct 6799 AGGGTGCGGCCATCCTCCAATTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGA 6740 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| || | ||| | ||||||| | |||||| Sbjct 6739 ATTCCTTCCTTGTCCTGGATCTT-GGTTTTGACGTTGTCGATGGTGTCGGACGGTTCCAC 6681 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTG 33746 ||| | ||||| || || || || | || |||||||| ||||| Sbjct 6680 GTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTACAAAAATCTG 6636 >seq386 Length=39556 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||| || || ||||| || ||||| || ||||| ||| || || | | | Sbjct 11421 ACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTTAGGGTCCTTCC 11362 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || |||||||| ||||| ||||||||||| | ||||||||| | || | ||||| || Sbjct 11361 ATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGAATTCCTTCCTT 11302 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || || | |||| ||| | |||||| | || || || | ||||| Sbjct 11301 GTCCTGGATCTT-GGTCTTGACATTGTCAATGGTGTCCGAAGGCTCGACATCCAACGTGA 11243 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTG 33746 | || || || || || |||||||| || ||||| Sbjct 11242 TTGTCTTGCCGGTCAAAGTTTTTACGAAAATCTG 11209 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | ||||| || || ||| || ||||| |||||||| || Sbjct 11888 CCTCCTCTTAGACGGAGGACCAAGTGAAGCGTGGATTCCTTTTGGATGTTGTAGTCACTC 11829 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| |||| |||| ||| ||||| ||||||||||| | ||||||||| | || Sbjct 11828 AAGGTGCGGCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGG 11769 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702 | ||||| ||||| || || |||| || | ||| || | ||| ||| Sbjct 11768 ATTCCTTCCTTGTCCTGGATCTTGGTCTTCACGTTATCAATGGTATCAGACGGTTCAACG 11709 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || | || || |||||||| ||||| Sbjct 11708 TCCAGTGTGATGGTCTTACCAGTGAGTGTCTTCACAAAGATTTGCAT 11662 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||| || || || ||||| ||| || || | | | || ||| Sbjct 11642 ACCAGGTGCAGAGTGGACTCCTTCTGAATATTGTAGTCGCTTAGGGTCCTTCCATCTTCC 11583 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||| ||||| ||||||||||| | ||||||||| | || | ||||| ||||| | Sbjct 11582 AATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGA 11523 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | |||| ||| | ||||| | || || || | |||||| || || Sbjct 11522 ATCTT-GGTCTTGACATTGTCAATAGTGTCCGAAGGCTCGACATCCAACGTGATAGTCTT 11464 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || |||||||| ||||| Sbjct 11463 TCCCGTGAGGGTCTTGACAAAGATTTGCAT 11434 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || || || ||||| |||||||| || | ||||| |||| ||| Sbjct 12098 ACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCGTCTTCC 12039 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||| ||||| ||||| || | |||||||||||| | || | ||||| ||||| Sbjct 12038 AGTTGCTTTCCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGG 11979 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | || | ||| | ||| || || |||||| || | || || || || Sbjct 11978 ATCTT-GGTCTTCACGTTGTCAATGGTATCAGATGGTTCCACATCCAGTGTAATAGTCTT 11920 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | ||| || |||||||| ||||| Sbjct 11919 ACCAGTGAGCGTCTTCACAAAGATTTGCAT 11890 >seq141 Length=126064 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||||||| || | |||||||| || ||| || ||||| ||||||||||| Sbjct 117154 CCTCCTCTCAATCGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACTC 117095 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||||||| ||||||||||| || | ||| |||||||| | || Sbjct 117094 AGAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTGGG 117035 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | || | ||| | ||||| || || || Sbjct 117034 ATTCCTTCCTTGTCCTGGATCTT-GGTCTTGACGTTGTCGATCGTGTCCGATGGCTCGAC 116976 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| || || || || | || || || ||||| ||||| || Sbjct 116975 ATCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATGGT 116925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328699597318080