Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq386 105 2e-17 seq456 96.9 8e-15 seq141 93.3 1e-13 seq3 93.3 1e-13 seq22 87.8 4e-12 >seq386 Length=39556 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || ||||| ||||| || ||||| ||||| || || ||| ||| Sbjct 11437 CAAATCTTTGTCAAGACCCTCACGGGAAAGACTATCACGTTGGATGTCGAGCCTTCGGAC 11496 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || |||||||| || || || Sbjct 11497 ACTATTGACAATGTCAAGACCAAGATTCAGGACAAGGAAGGAATCCCACCTGATCAGCAG 11556 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || || |||||||| ||||||||||||||||| | ||| ||||| | Sbjct 11557 AGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGGACCCTAAGCGACTACAATATT 11616 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||| ||||| || Sbjct 11617 CAGAAGGAGTCCACTCTGCACCTGGT 11642 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || || ||||| ||||| || || ||| ||||| | || Sbjct 11221 AAAACTTTGACCGGCAAGACAATCACGTTGGATGTCGAGCCTTCGGACACCATTGACAAT 11280 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| ||||| || ||| | || || Sbjct 11281 GTCAAGACCAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCAGCAGAGATTGATTTTT 11340 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| ||||||||||||||||| | ||| ||||| |||| || || ||| Sbjct 11341 GCTGGAAAGCAATTGGAAGATGGAAGGACCCTAAGCGACTACAATATCCAAAAGGAATCT 11400 Query 206365 ACTCTTCAC 206373 ||||||||| Sbjct 11401 ACTCTTCAC 11409 >seq456 Length=31050 Score = 96.9 bits (106), Expect = 8e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||||| ||| || || || || || || ||||| |||| |||||| || || Sbjct 6636 CAGAT-TTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGACGTGGAACCGTCCGA 6694 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| |||| || || ||||| || || || ||||||||| || ||| || Sbjct 6695 CACCATCGACAACGTCAAAACCAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCAGCA 6754 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || ||||| ||||||||||| ||||| ||||| | || || ||| |||||| | Sbjct 6755 GCGTCTCATCTTTGCCGGAAAGCAATTGGAGGATGGCCGCACCCTGAGCGACTACAACAT 6814 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 |||||| || || || |||||| Sbjct 6815 CCAGAAGGAATCCACCCTTCAC 6836 >seq141 Length=126064 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| ||||| || |||||| | || || || || ||||| |||| Sbjct 116942 CAAGACCCTCACCGGAAAGACCATCACTCTCGATGTCGAGCCATCGGACACGATCGACAA 117001 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || |||||||| ||||| ||| | |||||||| Sbjct 117002 CGTCAAGACCAAGATCCAGGACAAGGAAGGAATCCCACCGGATCAGCAACGTCTTATCTT 117061 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||| ||||| ||||| | ||| || ||||||||| |||| || || || Sbjct 117062 TGCCGGAAAGCAATTGGAGGATGGTCGAACTCTGAGTGATTACAACATCCAAAAGGAATC 117121 Query 206364 TACTCTTCA 206372 || || || Sbjct 117122 CACCCTGCA 117130 >seq3 Length=497493 Score = 93.3 bits (102), Expect = 1e-13 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 206196 AGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAA 206255 ||| || || |||||| | || || || || ||||| | || || ||| || Sbjct 135191 AGGTAAGACCATCACTCTTGATGTCGAGCCATCGGACACTATTGACAACGTCAAGACCAA 135250 Query 206256 GATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCA 206315 ||| || || || |||||||| || || ||| | |||||||| ||||||||||| Sbjct 135251 GATCCAGGACAAGGAAGGAATCCCTCCTGATCAACAACGTCTTATCTTTGCCGGAAAGCA 135310 Query 206316 GTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT 206375 |||||||||||| | || ||| |||||||||| |||| || || || || |||||| | Sbjct 135311 ATTGGAAGATGGACGCACCTTGAGCGATTACAACATCCAAAAGGAATCCACCCTTCACTT 135370 Query 206376 TGTT 206379 ||| Sbjct 135371 GGTT 135374 >seq22 Length=300247 Score = 87.8 bits (96), Expect = 4e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 206200 AAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATT 206259 ||| | ||||||||||| || || ||||| || | || || ||| ||||| Sbjct 203439 AAAGCAATCACTTTGGATGTAGAGCCATCTGATACGATTGATAATGTCAAGACCAAGATC 203498 Query 206260 CAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTG 206319 ||||| || ||||||||| || || || | ||||| || || |||||||| ||| Sbjct 203499 CAAGACAAGGAAGGAATTCCTCCCGATCAGCAGCGTCTTATATTTGCTGGAAAGCAATTG 203558 Query 206320 GAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || ||||| | |||||| ||| || ||| ||||||| || || |||||||| Sbjct 203559 GAGGATGGTCGTACTTTGAGCGACTATAACATCCAGAAGGAATCCACTCTTCA 203611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181804158855179