Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq217 551 2e-152 >seq217 Length=78499 Score = 551 bits (610), Expect = 2e-152 Identities = 711/979 (73%), Gaps = 2/979 (0%) Strand=Plus/Plus Query 28639 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 28698 |||||| |||| ||| ||||||| ||||| | || ||||| || || | ||| | Sbjct 40587 AACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGTTCGGTACTATCATGTTC 40646 Query 28699 CCGTGTCTCCTTGCAGCCACCATC-TGCTTCATTATTGCATTCATTGCGGCACCACCAGT 28757 || ||| ||||| || | |||| |||||||||| |||||| ||||| ||||| || || Sbjct 40647 CCAACTCTTCTTGCCGC-AGCATCATGCTTCATTACTGCATTTATTGCCGCACCTCCTGT 40705 Query 28758 TGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCAT 28817 |||||||| || |||||||||||||| || ||| |||||| || || || |||||||| Sbjct 40706 GGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCTTTACGGTAATAACATCAT 40765 Query 28818 ATCGGGAGCCGTCGTACCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGA 28877 | || | ||| | || ||| || ||||| | ||||||||||| ||||||| Sbjct 40766 CACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCACTTCTACCCCGTTTGGGA 40825 Query 28878 AGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCA 28937 |||| || | || |||||| | |||||||| ||||| | |||| | || || | || Sbjct 40826 AGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTACCAATTGGTTGTGATGCA 40885 Query 28938 CTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGG 28997 |||||| | || || | | |||||||| || |||||||||||| ||||| || || Sbjct 40886 CTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGGAACTTTCGTATCGCCTCGG 40945 Query 28998 AATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTT 29057 |||| | || ||||||| ||| |||| ||| || || || ||||| || | || || || Sbjct 40946 AATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGCAGCCGCCACCGCTGTCTT 41005 Query 29058 CCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGG 29117 |||| |||||| | || ||||| ||| || | |||||| | ||||| || Sbjct 41006 CCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCATGCCTCTTGGTATCAGCGG 41065 Query 29118 CACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCA 29177 |||||||||| |||| |||| ||||| ||||| || ||||| || ||||||||| | || Sbjct 41066 AACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACATCCTTATGCACCCGCTTCA 41125 Query 29178 CATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCT 29237 ||| || ||||| || || ||||| || || | || || |||||||| || || Sbjct 41126 TATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTCCGCCATGCACGGGTCTCT 41185 Query 29238 TGTCACGTCCTCGCTTGTGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAA 29297 ||| || ||||| | | ||||| || || ||| || || || | || ||||| Sbjct 41186 TGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAATCCACCAATAACGGATACAA 41245 Query 29298 GTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTT 29357 |||||| || ||||| || || || ||||| || ||||||||||| |||||||||||| | Sbjct 41246 GTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCACGGGTACTTTGGACGTCT 41305 Query 29358 GATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTG 29417 ||||||||||| || || ||||| || ||| |||| ||||||||| | ||| ||| Sbjct 41306 CATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTCACTTCTTCTTAGCTCTCTG 41365 Query 29418 GCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAA 29477 ||| || | || || |||| | | ||| |||| || || || ||||| || || || || Sbjct 41366 GCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCACCATGGCCTTCAACCTCAA 41425 Query 29478 CGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGC 29537 ||| || ||||| |||||| | | ||||| | | || |||||||| || || ||||| Sbjct 41426 CGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGACGTGTCATCAACACCTGGGC 41485 Query 29538 TGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAA 29597 || | |||| || || | || || | || || ||||| || |||||||||||||| Sbjct 41486 CGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGCACGAACGTAATGCTCATAA 41545 Query 29598 CTTCCCACTTGATCTGGCT 29616 ||| || |||||| ||||| Sbjct 41546 CTTTCCTCTTGATTTGGCT 41564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146663685922254