Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq217 585 7e-163 >seq217 Length=78499 Score = 585 bits (648), Expect = 7e-163 Identities = 716/977 (73%), Gaps = 0/977 (0%) Strand=Plus/Plus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| | || || || || ||||| ||||| ||||| ||||| || || | ||| | | Sbjct 40588 ACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGTTCGGTACTATCATGTTCC 40647 Query 18791 CGTGTCTCCTTGCAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAG 18850 | ||| ||||| || | || ||||||| ||| || ||||| ||||||||||| | Sbjct 40648 CAACTCTTCTTGCCGCAGCATCATGCTTCATTACTGCATTTATTGCCGCACCTCCTGTGG 40707 Query 18851 ACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATAT 18910 ||||||| || |||||||| |||||||| || ||||||||| || || |||||||| Sbjct 40708 ACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCTTTACGGTAATAACATCATCA 40767 Query 18911 CGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAG 18970 | || | ||| | || ||| || ||||| | ||||||||||| ||||||||| Sbjct 40768 CCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCACTTCTACCCCGTTTGGGAAG 40827 Query 18971 CTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACT 19030 || || | || |||||| | |||||||| ||||| | |||| | || || | |||| Sbjct 40828 CTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTACCAATTGGTTGTGATGCACT 40887 Query 19031 TCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGA 19090 |||| | || || | | |||||||| || |||||||||||| ||||| || || | Sbjct 40888 TCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGGAACTTTCGTATCGCCTCGGAA 40947 Query 19091 TGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCC 19150 |||| |||||||||| |||||| | ||| || |||||||| || ||| | || ||||||| Sbjct 40948 TGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGCAGCCGCCACCGCTGTCTTCC 41007 Query 19151 TTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTA 19210 | ||| || |||| ||||| || || | |||||| | ||||| || || | Sbjct 41008 TCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCATGCCTCTTGGTATCAGCGGAA 41067 Query 19211 CGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACA 19270 | ||||||| |||| | || |||||||| || || |||||||| ||||||||| | || | Sbjct 41068 CCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACATCCTTATGCACCCGCTTCATA 41127 Query 19271 TGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTG 19330 || ||| || || ||||| ||||| || || | || || |||||||| || |||| Sbjct 41128 TGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTCCGCCATGCACGGGTCTCTTG 41187 Query 19331 TTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGT 19390 |||| ||||| | | |||||||| || ||| | | ||| || | || ||||||| Sbjct 41188 TTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAATCCACCAATAACGGATACAAGT 41247 Query 19391 TTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTA 19450 |||| || ||||| || || || |||||||| || ||||| ||||| ||||| || || | Sbjct 41248 TTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCACGGGTACTTTGGACGTCTCA 41307 Query 19451 TTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGC 19510 | ||||| ||||| || |||||||| ||| |||| || ||||| || ||| |||| Sbjct 41308 TCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTCACTTCTTCTTAGCTCTCTGGC 41367 Query 19511 CTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATG 19570 |||| | || || |||| ||||| | || || ||||||||| |||||| | || | Sbjct 41368 CTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCACCATGGCCTTCAACCTCAACG 41427 Query 19571 GCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTG 19630 | || ||||| |||||| | | | ||| | | || |||||||| | || ||||| | Sbjct 41428 GATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGACGTGTCATCAACACCTGGGCCG 41487 Query 19631 ACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACT 19690 |||| |||| ||||| | || || | ||||| ||||||||||||||||||||||||| Sbjct 41488 ACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGCACGAACGTAATGCTCATAACT 41547 Query 19691 TCCCACTTGATTTGGCT 19707 | || |||||||||||| Sbjct 41548 TTCCTCTTGATTTGGCT 41564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141146957919942