Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq108 116 4e-21 seq456 100 3e-16 seq386 86.0 6e-12 >seq108 Length=147947 Score = 116 bits (128), Expect = 4e-21 Identities = 477/734 (65%), Gaps = 37/734 (5%) Strand=Plus/Minus Query 147675 GCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAG 147734 ||| || || |||||| |||||||| || ||||| | |||| |||||||| || Sbjct 13075 GCCTTCTTTCTCGTACTTTTCGTACAATTCCTTGAACTCYTGTCCGTGGCAATCGGGGAG 13016 Query 147735 GCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCAT 147794 ||||| |||| | |||||||||| || ||| | ||| || || || ||| ||| Sbjct 13015 ACCGGGGCACTCGTCGGGACACATCAACGTCCATGTCCCGTTGGCCTTGACACGTTCCAT 12956 Query 147795 AAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCG-- 147852 ||||| || || | ||| || | ||| | | ||| || || || ||| | || Sbjct 12955 GAACAGGTCAGGGATCCAGAGAGAGTAAAACAAATCACGTGC---GCGATCGGCTTCGTT 12899 Query 147853 CCCATG----TTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAA 147907 ||| || ||||| | || ||| | || | |||| || ||||||||||| || | Sbjct 12898 CCCGTGGTTTTTGCGA---AGATCTAAAAAGGCAA-AGATATCTGCGTGCCAGGGCTCCA 12843 Query 147908 TGTAGACGGCCAGCGCACCTTTACGCTT---TCCGCCCTGGTCGACATGGCGCACCATGT 147964 ||| | ||| | || || ||||| ||| ||||| ||||| | | | ||| Sbjct 12842 AGTAAATGGCAATGCTTCCCTTGCGCTTGCCTCCACCCTGATCGACGTATCKGGCGGTGT 12783 Query 147965 TGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCT 148024 |||| || || |||| |||||| | | ||| | | || |||||||| | || | Sbjct 12782 TGTTGAAGACACGCAACATGGGGACGATGCCATTGGATGTACCGTTGGTTCCACGAATGT 12723 Query 148025 TGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACG--CCAATGCCGCCGCCGTACTTTGA 148082 | | ||| || | | ||| ||| | ||||| || || ||||||| || Sbjct 12722 AGGATTTACTGGCACGAATGTTGTGG--GTTGCCAGACCAATTCCACCTGCGTACTTCGA 12665 Query 148083 TATGGCAGCGCAATCGCCC---AATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGAC 148139 || | ||||| || | | ||| ||||||||| |||||| ||| | || | Sbjct 12664 AATCACGGCGCA---GCTCTTGAGTGTGTCGTAGATGCCATCGATGGAGTCTTCCTTCAT 12608 Query 148140 -GCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGG 148198 | ||| || |||||| || |||| || || | ||||| || ||| ||||| | Sbjct 12607 TGTCAA-CAGAAAACAAGAGGACATCTGAGGGTTGTTGGTTCCGGCGTTGAAGAGGGTCG 12549 Query 148199 GACTCGCGTGCGTAAACAATTTTT--GACTCATCATGCGATACGTCTC-AATAGCGTCTT 148255 | | || || || || || || || | | ||| ||||| || | | || Sbjct 12548 GTGTGGCATGGGTGAAGTATCGTTCCGAGAGGCCTTT--ATAGGTCTCCAAGACCCGCT- 12492 Query 148256 CGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGG 148315 |||| || || |||||||| || | ||||||||||| | |||| |||||||||||| | Sbjct 12491 CGATATCATCTCCGTGAATTCCAACGGCGACGCGCATCAACATGCACTGTGGTCGTTCTG 12432 Query 148316 CAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTAC 148374 | | |||| |||| ||| || | || || ||||||||||| |||||||||| Sbjct 12431 CGATCTTGCCA-TTGAGCTTRAGCAAGTAGGACTTCTCGAGGGTTTTAAAACCAAAGTAA 12373 Query 148375 TTGTAATCAAAATC 148388 | ||| || ||||| Sbjct 12372 TCGTACTCGAAATC 12359 >seq456 Length=31050 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||||||| | ||||| || | | | || || || || |||||||||||||||| ||| Sbjct 6853 CGCAAGCGAAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTG 6794 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||| || | || || |||| | |||| |||||||| || || ||||| || ||| Sbjct 6793 CGGCCATCCTCCAATTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGAATTCCT 6734 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || ||| | | || | || |||| ||| ||||| || | Sbjct 6733 TCCTTGTCCTGGATCTTGGTTTTGACGTTGTCGATGGTGTCGGACGGTTCCACGTCCAGG 6674 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTG 132120 || | || || |||||||| || |||| |||||||| Sbjct 6673 GTGATGGTCTTGCCAGTCAGGGTCTTTACAAAAATCTG 6636 >seq386 Length=39556 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | | || || ||||| ||||||||||| |||| ||| || ||||| Sbjct 12099 AACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCGTCTTC 12040 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || || || || | | |||| |||||||| ||||| ||||| || ||||| || || Sbjct 12039 CAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTG 11980 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || |||| | || | ||||| | || ||||| || | || | || || Sbjct 11979 GATCTTGGTCTTCACGTTGTCAATGGTATCAGATGGTTCCACATCCAGTGTAATAGTCTT 11920 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| || || || | || || ||||| Sbjct 11919 ACCAGTGAGCGTCTTCACAAAGATTTGCAT 11890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476604652553640