Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq141 107 2e-18 >seq141 Length=126064 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || ||||||| | || || || || | |||||||| | ||||| |||| ||||| || Sbjct 116924 CACCATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTCTCGATGTCGA-GC 116982 Query 25231 CAACG-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 || || | || ||||| | || || || || || || || || || || || | Sbjct 116983 CATCGGACACGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAAGGAATCCCACCGG 117042 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATT 25349 |||||||| | || || | | ||| || ||| | || |||| | ||| | | || |||| Sbjct 117043 ATCAGCAACGTCTTATCTTTGCCGGAAAGCAATTGGAGGATGGTCGAACTCTGAGTGATT 117102 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 |||| || ||||| ||||||||| | ||||| || | |||||||||||||| Sbjct 117103 ACAACATCCAAAAGGAATCCACCCTGCATTTGGTCCTGCGATTGAGAGGAGGA 117155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445088285515680