Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq55 329 4e-85 >seq55 Length=197180 Score = 329 bits (364), Expect = 4e-85 Identities = 458/633 (72%), Gaps = 12/633 (2%) Strand=Plus/Plus Query 146877 GAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTT 146936 ||||||||| |||| |||||| || ||||||| || || ||||| |||||||| Sbjct 129807 GAGCTTGGGAAAGGCCCGGGGGGCCCGCTCCAGCTGCTCCTTGAGCGGCTCGACGTGGTT 129866 Query 146937 GAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCAC 146996 |||||||||||| ||||||||||| ||||| || | ||||| ||||| | |||||||| Sbjct 129867 GAGGTAGACGTGGGCGTCCCCCAGCGTGTGGACCAGCTCCCCGGGCTTGCGCCCGGTCAC 129926 Query 146997 GTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCC 147056 ||||||||| | || || || |||| ||||||||| ||||||||||||||||||||||| Sbjct 129927 GTGGGCCACGAGGTGCGTCAGGAGCGCGTAGCTGGCAATGTTGAAGGGGACCCCCAGGCC 129986 Query 147057 CATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCC----GTC--GGCCACGTA 147110 |||||| |||||| |||||||| ||||| || ||| | ||| | | ||||| Sbjct 129987 CATGTCGGCCGACCGCTGGTACATGTGGCAGCTGACCTCGTCGGTGGTCGTGTCGACGTA 130046 Query 147111 AAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCA 147170 ||||||||||| | |||||| || || || ||||| || |||| | | ||||||||| Sbjct 130047 GAACTGGCACAGCAGGTGGCAGGGGGGGAGGGCCATCTCGTCCAGGGCGGAGGGGTTCCA 130106 Query 147171 GGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGAT-AACCCACC 147229 ||| | | | ||| | | ||| ||||| ||| |||| ||||| || | | Sbjct 130107 GGCGCTCATGAGGATCCGGCGGTCCTCCGGGTTGTGCTTGATCTTGTCGATGCACTCGGC 130166 Query 147230 TCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACGTACCTGGCCCCA 147288 ||||||||| |||||||| || ||||| || ||| |||| |||| ||| ||| Sbjct 130167 -CAGCTGGTCGACGCCCTGCCCGGTGTAGTCGGT-GTGCATGTCCTTGTACTCGGCGCCA 130224 Query 147289 AAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAG 147348 ||||||| |||||| |||||||| || || ||||||||||| || || ||| || Sbjct 130225 AAGTGCCGCCACTGAAAGCCGTAGACGGGGCCCAGGTCGCCCTCCTCTCGGTGTCCS-AG 130283 Query 147349 CCCGCCCG-CTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGC 147407 ||||| | || ||| || || ||| ||| |||||||||| || | ||| | Sbjct 130284 CCCGCGGGCCTCGAGGAATTCCTTGGAGGCGTTTCCGTCCCAGATCCCGATGTTCTTTTC 130343 Query 147408 GGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCC 147467 ||| || | || ||| ||| |||||||||||| || ||||| || || Sbjct 130344 CTTGAGGAGGTTGGCGTTGGTGCTGCCGGAGATGAACCAGAGGAGTTCCTCGGCGACTCC 130403 Query 147468 CCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGG 147500 |||||| ||| |||| ||||||||||| || Sbjct 130404 CCTCCAGAAGGTTTTCTTCGTGGTCAGCAGCGG 130436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583479984333600