Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq110 383 2e-100 seq41 138 2e-26 seq837 134 2e-25 >seq110 Length=137954 Score = 383 bits (424), Expect = 2e-100 Identities = 409/533 (77%), Gaps = 8/533 (2%) Strand=Plus/Plus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 |||||||||||| |||||||||||||||||||| |||||||| || ||| |||| ||||| Sbjct 10922 TGGGAAATGTAC-AAAAAGGCCGAGGCCTCCTTCTGGACCGCGGAAGAGATCGATCTCGG 10980 Query 1455839 CGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGT 1455898 | | |||| || | | ||||| |||| |||| ||||||| || ||||||| ||| | Sbjct 10981 CTCGGACATGGCCGATTGGGTCAAGCTGTCCGACAACGAGCGACACTTCATCAGCCACAT 11040 Query 1455899 CCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTA 1455958 ||| ||||| ||| || || || || ||||| ||| |||||||| ||||| Sbjct 11041 CCTGGCCTTCTTT-GCGGCATCGGACGGGATCGTCAACGAAAACCTGGCACAGAACTTTA 11099 Query 1455959 TGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAA 1456018 ||| ||| |||| | ||| |||| ||| | || ||||| ||||||||||| | || | Sbjct 11100 TGACCGAGCTCCAGTCGCCCGAGGGACGCTGCTTCTACGGCTTCCAGATCGCGGTGGAGA 11159 Query 1456019 ACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGA 1456078 |||||||||| || |||||||||||||| |||||||| ||| ||||||| | | |||| Sbjct 11160 ACATCCACTCGGAGACCTACTCGCTCCTCATCGACACGTACATCAAGGATTCCGAGGAGA 11219 Query 1456079 AGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGG 1456138 || || ||| | | ||||||||||||||| || | ||| ||||||||||| ||||| Sbjct 11220 AGCTCCGTCTCCTCCACGCCATCGACACGGTCCCCTGCGTGCGGAAAAAGGCCCGCTGGG 11279 Query 1456139 CGATGAAGTGGATCAACAAGGAGGGCCTCGACA-CTTTGCCGAGCGGCTCGTCGGC-TTT 1456196 | | ||||| | || ||| | | || |||||| |||||| ||||| | ||| Sbjct 11280 CCCTCCAGTGGTGCGAC---TCGGGAATGGCCAGCTTTGCGGAGCGGTGCGTCGCCTTTT 11336 Query 1456197 GCCGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGC 1456256 || ||| ||||| |||||||||||||| || |||||||||||||||||||||||||||| Sbjct 11337 GCGTCGTGGAGGGAATCTTTTTCTCGGGGAGCTTCTGCGCCATCTTTTGGCTCAAGAAGC 11396 Query 1456257 GCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 |||||||||||||||| | | |||| |||||| | ||| |||||||| Sbjct 11397 GCGGCCTCATGCCCGG-CCTGGCCTTTTCCAACGAGCTCATCTCGCGCGACGA 11448 Score = 215 bits (238), Expect = 7e-50 Identities = 247/324 (76%), Gaps = 10/324 (3%) Strand=Plus/Plus Query 1456454 CACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACGTG 1456513 ||||| ||||||||||| ||||||||| | ||| |||||||||| ||| || || | Sbjct 11456 CACTGCGACTTTGCCTGCATGCTCTACAACAAGCTGGTCAACAAGC--TCGCCCC-CGAG 11512 Query 1456514 CCCAA---GCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCG 1456570 | || | |||| || | | |||||||| ||||| || || || |||||||| | Sbjct 11513 CGCATCGTGGAGATTGTCACCAACGCCGTCGACATCGAAAAGGAATTCGTCAGCGACGCC 11572 Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTG 1456630 || ||||| | |||||||||||||||| | | ||||||| |||||||| || || || Sbjct 11573 CTCCCGGTAGAGCTCATCGGCATGAACTCGAA-GCTCATGCAGCAGTACATCGAGTTCTG 11631 Query 1456631 TCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCG 1456690 ||||||||||||||| | || || || ||| |||||||||| ||| ||||||| Sbjct 11632 -CGCCGACCGCCTGCTGGTCGCCCTGGG-TGCCCCAAAGCACTACCAGACCCCCAACCCC 11689 Query 1456691 TTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT- 1456749 || ||||||||| |||||||||| |||| |||||||||||||||||| ||||| Sbjct 11690 TTTGAGTGGATGGAGATGATCTCGCTGCAGGGAAAGACCAACTTTTTCGAGAAGCGCGTC 11749 Query 1456750 GGCGAGTACGCCAAGGCCGGCGTC 1456773 || || ||||||||| ||||||| Sbjct 11750 GGGGAATACGCCAAGAGCGGCGTC 11773 >seq41 Length=226872 Score = 138 bits (152), Expect = 2e-26 Identities = 182/249 (73%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| ||| ||||||||||| | |||||||| |||||| |||| | | Sbjct 41879 TCGTACTCCACCTACATCTACAAGGTTTTGAAGCAGGTTCACCCCGACACCGGT-----A 41933 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| ||| ||||| ||||||||||| || ||||||| || |||| ||||| Sbjct 41934 TC-TCCAAGAAGGGAATGTCTATCATGAACTCCTTCATCAACGATATCTTCGAGCGCATT 41992 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGC--GCAACACGATCGGCACGCGCG 725073 | | ||| ||||| || || || ||||||| || || | || | |||| | Sbjct 41993 GCCGGCGAAGCCGGAAAGCTTGCCACCTACAACAAGAAGGCCACCCTTTC--CTCGCGAG 42050 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 |||||||||||||||| ||||| || | | ||| || || |||| ||||||||| |||| Sbjct 42051 AGATCCAGACCGCCGTCCGCCTCATGCTTCCCGGTGAGCTCGCCAAGCACGCCGTTTCCG 42110 Query 725134 AGGGCACCA 725142 |||| |||| Sbjct 42111 AGGGAACCA 42119 >seq837 Length=3602 Score = 134 bits (148), Expect = 2e-25 Identities = 181/249 (73%), Gaps = 10/249 (4%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| ||| ||||||||||| | |||||||| |||||| || | | | Sbjct 2538 TCGTACTCCACCTACATCTACAAGGTATTGAAGCAGGTCCACCCCGACACTGGT-----A 2484 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| ||| ||||| ||||||||||| || ||||||| || |||| ||||| Sbjct 2483 TC-TCCAAGAAGGGAATGTCTATCATGAACTCCTTCATCAACGATATCTTCGAGCGCATT 2425 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGC--GCAACACGATCGGCACGCGCG 725073 | | ||| ||||| || || || ||||||| || || | || | |||| | Sbjct 2424 GCCGGCGAAGCCGGAAAGCTTGCCACCTACAACAAGAAGGCCACCCTTTC--CTCGCGAG 2367 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 |||||||||||||||| ||||| || | | ||| || || |||| ||||||||| |||| Sbjct 2366 AGATCCAGACCGCCGTCCGCCTCATGCTTCCCGGTGAGCTCGCCAAGCACGCCGTTTCCG 2307 Query 725134 AGGGCACCA 725142 |||| |||| Sbjct 2306 AGGGAACCA 2298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177705199430038